Aliivibrio fischeri ES114: VF_1707
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Entry
VF_1707 CDS
T00236
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfi03016
]
VF_1707 (rnd)
Enzymes [BR:
vfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VF_1707 (rnd)
Transfer RNA biogenesis [BR:
vfi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VF_1707 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAW86202
UniProt:
Q5E444
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All DBs
Position
I:complement(1922957..1924078)
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AA seq
373 aa
AA seq
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MEFEIVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI
DDLTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK
LVSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAY
QESALAVKKREKQPDAEKAYLDIKNAWQLNPKQLAILKMAAKWRLEEARKRDLAVNFVVK
ELSLWKLARFGLRSKDQMLKEEFDPREVQRHGGKLLRFTYLADDLNPNEYPEPVTRLMDY
PGYKQIFKLLKDEVKIASDKSGLMPEFLASKKQLNQLLSWKWKKNAAPELKPDVLKGWRG
ELLEARFMSVIEK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtggaatttgaaatcgttacccagagtcagcgtttagctgagatctgtcagcaggcaagc
acgaaaccatttttaatgttggatactgagtttgtaagaacgcgaacgttatatgcacgt
ttaggtttaattcaaatgtttgatggtgagacattagcgcttgttgatccggttgagatt
gatgatttaacgcctctttgggatttattgaaaaacgaatcagtgacaaaagtacttcat
gcatgtggtgaagatttagaggtattccaacattacgctggttgtatgccaacacctatg
attgatacacaaatcatggcggcatttttaggttatggactttctacgggattcgctaag
ctggtttctgactacctaggtattgaattagataaaggcgaagcaagaacggattggatg
gcacgtccattatccgataagcaacttcactatgcagcggcagatgtgcattatttattg
ccattatttgaaaaacttcaagctgagttatctcaaactcaatgggaagatgcggcttat
caagagtcagcacttgcagtaaaaaaacgtgaaaagcaaccggatgcagaaaaggcttat
ctagatattaaaaatgcatggcaactcaatcctaagcagttagctattttaaaaatggca
gcaaagtggcgtttagaagaagcgagaaagcgtgatttagcggttaactttgttgtaaaa
gagctgagtctttggaaactggctcgatttgggcttcgtagtaaagatcaaatgcttaaa
gaagaatttgatccaagagaagttcaacgtcatggtggtaaattattacgttttacttac
ttagccgatgatttgaatcccaatgaataccctgaaccagtaacacgtttaatggattac
ccaggctataagcaaatctttaaattactaaaagatgaagtgaaaatagcttcggataaa
tcgggtttaatgcctgagtttttagcatcgaaaaaacagctaaatcaattattgtcttgg
aaatggaaaaagaacgcagcaccagagttaaaacctgatgtattaaaagggtggcgtggt
gaattattagaagcgcgctttatgtctgtgattgaaaagtag
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