Viruses: 80539364
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Entry
80539364 CDS
T40000
Symbol
QKS84_gp1
Name
(RefSeq) Pennisetum alopecuroides mosaic virus; polyprotein
Virus
3071225
Pennisetum alopecuroides mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
Peptidase_C6
RdRP_1
Poty_coat
Poty_PP
Peptidase_C4
Potyvirid-P3
Peptidase_S30
DEAD
Helicase_C
Flavi_DEAD
Peptidase_S76
Motif
Other DBs
NCBI-GeneID:
80539364
NCBI-ProteinID:
YP_010800718
RS:
NC_076904
LinkDB
All DBs
Position
NC_076904:143..9541
Genome browser
AA seq
3132 aa
AA seq
DB search
MEWTVVETKRMRNVTYEKKMKKIQHKYHYEHLEYNAKLAVAKNDRICKRAGSGAHVAFPI
KTTKKWVRKTDQPVCSQDVPENAIMIGSMIVPINTKFNEANMVIEEPKIQVKEEVVIVKK
PAEVVLNIDDMTKFSKILIDQCMAYKVPIEIIGSKRKHVARVKVHVNKGRKWFKLETLHE
VKKLMRRDSILPQHLEYFVRALVRQYDKVTKEDIATFTYGSSGLTYIDPDSNELVIVRGR
RDGEIINAIKYIDGDLREIEHYSSDQLGKQFWDGFTESFIKQRREPHDHSNHTPVMSLSD
CGKRAAIMENAFHQTYKITCKDCLKTFDDCDEQEICTRINQGINRMQELNRTFVNNDSGL
NLCLKTLEKVTRVATAHQQSCIEAIRVLSPNLPTPANRLSDIARILVQTPLHNEDEAKIL
GDNLLEIARWMSKRLKEPQVDRLLTYKNKVPPRGVVGNVLMCDNQLDKNGNFLWGEREYH
AKRFLSNFYEVVDPSDEYDKHVIRKSPNTQRHLAIGRLVVIMDFAQMRERLRGLPKPRME
ITKACISSLNDDIVYPCSCVTQESGKPLLSELIMPTKEHLLLGNAEDSHLVDIPKTDPPR
MYIVKDGYCYMNIFLAMLIYVDEPQAKNFTKLIRDSIQPKLGKWPTLKDVATACLIITAF
FPETLQAEIPKILIDHESKTAHVLDTFGSLTTHYHILKANTIAQLLRFAYIDLESEIKDY
VVGGEFVHKSIVQLTEYLIKGIFNENIMKNIIENEPFLLILAINSPCVLINMYNNGNFEK
AMQYYSTRNMPLANLFAAMESFVKPVSAADIFAQQLQVMDQAAYTIHSQMAGTYVNDPLA
KYVKHHLIVMMNRSDMNEQLMREGHTIFDNRTYELIEKKYIEDINTAWTELSLFGKLRVL
RRLYSGKKRSIDTIRVKESIDLGGIYNISPTLLVSELREKSRARVSFITTKLQSTYNTIA
SSFQGGIIKTAYRCLPDTIKLMHVAVVMSCISTIIYSICATGAEYKRFKQEEMKEKIMRE
EELVEVIYNQFMQKTNGEGTRREFMQLIESKYPNLYIRALSLTAEEVEHQKKTVTALRFE
QMIAFATLAIMLYDSERSDAVYKILQKIRACTGILSTEVEHQGLQIDDVHQTKHLKQLTV
DFETEQELPPQTFTHDTTFEKWWSIQISQGRTHTHYRNKGEFITFTRANAAAQCNKIAHM
ANTQHFLVKGNVGSGKSTGIPRYLSDRGRVLVLEPTRPLTENVYQQLKQEPWCLDPTMQM
RGKSIFGSTPITIMTTGYALHLFCNNVEKLHEYSFIMFDECHVVDANAMTFSCLLSEQNY
QGKILSVSATPPGRESEFETEHPVDLRIFEEVGFETFVNEQGTGSKLDIVSICNSILVYV
ASYNEVDHLSRLLNEKGYSVTKVDGRTMNGSKNSGSNVDTNVCVNIGEILKERIRVNKNH
FIVATNIIENGVTLNVDGVVDFGMKVVADLDVDNRSVVYSKVPISYGERVQRLGRVGRFK
KGYAFRIGTTRKGIVDIPSMTATEAAFLCFAYGLPVITHNVSTTHLSNVTTLQARTMLQF
ELPIFLMSELVKYDGHMHPEIHRILKPFKLRDSAIRLRETALPQSAGDIWLSVGTYKKLG
YKLALPDDYKIPYYVNGVSDKIFGDIWEVVKTFRSTCCMTRMTSSCAGKIAYTLQTDAHA
IPRTLAIIDGLIRDEQTKHAHFMSVTSRTTSTYNFTMNGIMEMIRSRYMKDHSLENIQKL
EMVKNQIVEFSNANISYSDVETVKHFGALQTVIHEGKTEIVKCVNLKGVWNKELMCKDGI
VAFGVALGGALMSWELFRYYFQTEVEHQGKTKRSNQKLKFRQARDAKLGREVYGDDGTLE
HYFGSAYKQKEKKGNKTRGLGAKTRRFTHIYGFDPTEYNMIRFVDPLTGVTLDETTQPDM
QLVKEYFHQIRENRINDDELERQHVYSNPGIHAYFIKNSTNSALKVDLTEHNPLLQTRSN
TLAGFPERENELRQTGTPIEVQKSEVPRPNEVNVEHEGLTIFRGVANYNPITDNICLVCN
ESEGKNMTIYGIGYGPYLIINSHLFENNNGTLSIQSTRGLYVVKNTTKLQIIPIERRDII
LIRLPKDHPPFTKSIKFNKPNKLDRVVMLRMNYQEGRHIPEFSENSIIVQQSDSFWKHWI
ATKHGYCGLPLVNTRTKEVVGIHSLRATDDSVNYFAAINDDFLNKLNMPIEDIQWTRGWK
YNTNLLSWGGMYMKNTKPASIFNTTKQIEVVCEHSVDDVKPTWLTRQFKNNLSVVGKMPG
NLVTKHVVKGKCSMFQLYLEVDENARKFFDPLLGKYGKSLLNRKAFIQDFTKYDKPITVG
VVQTNYFEIAISDVINLLHTLGIRDCNYVTIPDEIYDSLNMKASVGALYSGKKKDYFKDM
TQEEKALLLEKSCERLYKGELGLWNGSLKAEIRPMEKILANKTRTFTAAPLETLLGGKVC
VDDFNNQFYENHLKGPWTVGISKFYKGWDRLLRSLPEGWIYCDADGSQFDSSLSPYLINA
VLRVRLACMEEWDIGEELLKNLYTEIVYTPIATPDGSIVKKYKGNNSGQPSTVVDNTLMV
ILAFKYSLRVNNIESQDESSVIRMFGNGDDLLIAVNPEYEYLLDNMHEYFGELGLNFDFS
NRTRNKEDLWFMSHRGLLKDGLYIPKLEKERIVAILEWDRSSEPEHRLSAICAAIIESWG
YDDLIYQVRKFYQWVLEQEPYKELAAQGKAPYLSETALRKLYTDEQISQNELFNYYREIY
DSILYDGNNPIEVEHQSRVDTGTPTGDNTGDTGSGSGSGSGSGSGSGSGSGNSGSGGTGG
TGTGGTSGKGSGGSGGTGGTGSGTGGTGGKGTGGTGDKTGGTGSGGSGSDAGKGGSGGTG
NTGGGGDTGKQVANPKDKDVDTGTPGTFTIPKLKKLSQKMQLPKVGGNVILNVSHLLVYK
PQQADISNTRATQDQLQFWYDRIKQEYEVTDEQMKILMNGFMVWAIENGTSPNINGYWVM
MDGETQVAYPLKPIVENAKPTLRQCMMHFSDAAEAYIEMRNTEQPYMPRYGLLRNLQDRS
LARYAFDFYMVNSKTPNRAKEAHMQMKAAAVRGSNNEMFGLDGNVGETTENTERRMATDV
NRNTHSYKGARI
NT seq
9399 nt
NT seq
+upstream
nt +downstream
nt
atggagtggactgttgttgagactaagcggatgaggaacgtcacgtatgagaagaagatg
aaaaagatccagcataaatatcattacgagcaccttgaatacaatgcaaaacttgcagtt
gcaaagaatgatcgaatttgcaagcgagctggaagcggtgcacatgttgcctttccaatt
aaaaccactaagaaatgggtacggaaaacagatcaacctgtgtgctcacaggacgtccca
gaaaatgcgataatgattggatccatgattgtgccaatcaatacaaagtttaatgaagca
aatatggtgattgaagaaccaaaaattcaagtgaaagaagaggtagtcattgtcaagaaa
ccagcggaagttgttttaaacattgatgacatgactaaattttcgaaaattttaattgat
cagtgtatggcttataaggtgccaattgagataattggaagtaaacgaaagcatgtggca
agggtaaaagtacatgtaaacaaaggtcgcaaatggtttaaactcgaaacattacatgaa
gttaagaagctaatgagaagagattcaatcttaccacaacatttggagtactttgtgcga
gcgttagttagacaatatgacaaggttactaaagaggatattgctacgttcacgtatggt
agtagtggattaacgtacattgacccggatagtaatgaattggtaatagtgcgcggtaga
cgtgatggggaaataattaacgcaatcaaatacatagatggcgatcttagagaaattgag
cattattcgtcagaccaacttgggaagcaattttgggatggttttacagagagtttcatt
aaacaacgtcgtgagccacatgatcattcaaaccatacaccagtaatgtcgttatcagat
tgtgggaagagggcagccatcatggaaaacgcttttcatcaaacgtataaaataacatgc
aaggattgcttaaaaacatttgatgattgtgatgaacaagagatctgtacacgcataaac
caaggaataaatagaatgcaggaattgaatcgaaccttcgtaaataatgactcaggacta
aacttgtgtttgaaaactttggagaaagttactcgagtggcaacagcgcaccaacaatct
tgcatcgaagcaattagagtgctaagcccaaaccttccaacgccagccaatagattaagt
gatatagcacggattttagttcaaacacctttgcataatgaagacgaggctaaaatacta
ggtgataacttacttgagatagctaggtggatgtctaagaggttgaaggaaccccaggtt
gatcgattactaacatataagaataaagtaccaccaagaggcgttgttggtaatgttttg
atgtgtgataaccagttagataaaaatggtaatttcttatggggtgaacgggagtaccat
gctaagaggtttttatcgaatttttatgaggttgttgacccatcagatgaatatgataag
cacgtaattagaaaatcaccaaacacacagagacacttggccattggacgattggtcgtc
atcatggattttgcacaaatgagagagcgccttagagggttacctaagccacggatggag
ataaccaaagcttgtattagttcattgaatgatgacattgtatatccgtgtagctgtgtg
acacaagagagtggaaaaccgttacttagtgagctaatcatgcctactaaagaacatcta
ttgcttggtaatgcagaagactcccacttagtcgatataccgaaaaccgaccctccaaga
atgtatatagtaaaggatggttactgctacatgaatatcttcctagctatgttaatatat
gtagatgaaccgcaagccaagaacttcacgaagttgattagggatagcattcaaccaaag
ttaggtaaatggccaacacttaaagatgtcgcaacggcgtgtttaatcataaccgcattt
ttccctgaaacattgcaagcagagataccaaaaatactaattgatcatgaaagtaaaact
gcacatgtgttagatacatttggatcattaactacacattatcatattctcaaggccaac
acaatagcgcaattacttaggtttgcatatattgatttggagagtgaaattaaagattat
gtcgttggtggtgaatttgtgcataaatctattgtccagttaactgaatatctaattaaa
ggtatatttaatgaaaatattatgaaaaatattatagagaatgaaccatttctattaatt
ttagcaatcaattcaccatgtgttttaataaatatgtacaacaacggaaattttgaaaaa
gctatgcaatattattccacccgaaacatgccattagctaatttgttcgctgctatggaa
agttttgttaaaccagtcagtgcagctgatatatttgcacagcaattacaggttatggat
caagcagcatacacaattcactcacagatggcaggaacatatgtcaatgacccgctagcg
aaatatgtaaagcaccatttgatcgttatgatgaatagatcagatatgaatgaacagcta
atgagagaaggacacacaatcttcgataatagaacatatgaactcatcgagaaaaaatac
atcgaagatataaacacagcatggacagagctgagcttgtttggaaaattgcgcgttctg
cggcgattatattctggaaagaaacgatcaatagatactataagagtgaaagaaagcatc
gatttaggcggaatttacaatatatctccaacgctcttggtttcagaattacgcgagaag
agtcgagcgagagtcagctttattacaacgaaactccaatccacatacaatacaatcgca
agttcatttcagggtggcatcattaaaactgcttacagatgtttaccagacaccatcaag
ttaatgcacgttgcagttgttatgagctgtatttctacgattatatactctatatgcgcg
actggtgctgaatacaagagatttaagcaagaagaaatgaaagagaaaataatgcgagag
gaggagttagttgaagtgatatataaccagtttatgcagaagactaatggagaaggaaca
aggagagagttcatgcagttgattgaaagtaaatatccaaacttgtatatacgagcactt
tctttaacagccgaagaagttgagcaccagaagaaaacagtgacggcgttacgttttgaa
caaatgatagctttcgcaacattagccataatgctttatgattcggaacggagcgacgca
gtatataaaattttgcagaagatacgtgcgtgcacaggtatattaagtacagaagttgag
catcaaggtttacaaatagatgatgtacaccaaacgaaacatttgaaacaactaacagta
gattttgaaacagagcaagaattaccaccacaaacttttacacatgacactacttttgag
aaatggtggagtattcaaatctcacaaggaaggacgcatacacattacagaaacaaagga
gaatttatcacattcactcgggctaacgcagcagcacaatgcaacaagatagcacacatg
gctaacacgcaacattttctagttaaaggcaacgtagggtcaggtaaatcaactggtata
ccgaggtatctaagtgatcgtggtagggtgcttgtgttggaaccaactagacctttaaca
gaaaatgtgtaccaacaactgaagcaggaaccttggtgtctagacccaacaatgcaaatg
agaggaaagagcatatttggttcaacccccatcaccataatgacgacaggatatgcatta
catctattctgtaataatgttgagaagttgcacgaatacagttttattatgtttgatgag
tgtcatgtagtagatgcaaatgcaatgaccttttcgtgtttattatcagaacaaaattat
caagggaaaattctatcagtgtcagcgacacctccaggtagagaatcagaatttgaaaca
gaacatccagtagatctgaggatatttgaagaagttggctttgaaacttttgttaatgaa
cagggcaccggttcgaaattggacattgtttctatttgcaattcaatactagtgtatgta
gccagttataatgaagtagaccatttaagtcgtttgttgaacgagaaggggtattctgtt
acaaaagtggatggcagaacaatgaatggatcgaagaatagtggttccaatgtagatacg
aacgtgtgtgtaaatataggtgaaatacttaaagaacgaattcgtgtaaataaaaatcac
ttcatagtagcaactaatataattgagaatggtgtcacgttaaatgtcgacggtgtggtt
gattttggaatgaaagtggtggctgatttagatgtcgataataggtctgtggtgtatagc
aaagttccaatatcatatggagagcgagttcaacggcttggtcgagtgggtagatttaag
aaaggatacgcatttcgaattggaacaacgagaaaaggaattgtggatataccatcaatg
acagctacagaggcagcatttctttgtttcgcatacggattgccagttataacgcataat
gtgtcaacaactcatttatccaatgtaactacattacaagcacgaacaatgcttcaattt
gaacttccaattttcttgatgagtgaacttgtaaaatacgacggacacatgcatcccgag
atacataggattttgaaaccatttaaactgagagattcggcaatacgtttgagggaaaca
gctctaccacaaagtgccggtgacatatggctatcagtgggcacatacaagaaactagga
tacaaattagcattgcctgatgattacaagataccgtattatgtgaacggtgtgagtgat
aaaatatttggggacatttgggaagtagtaaaaacatttcgttcaacatgttgcatgacg
agaatgactagctcttgtgctggaaagattgcatacacgttacaaacagatgcacacgcc
atacctcgaactttggccataattgatggattgattagagatgagcaaacaaagcacgca
cacttcatgagtgtgacctcaagaacaacatctacatataacttcaccatgaatggtatt
atggaaatgattaggagtcgatatatgaaagatcatagtttagaaaacattcaaaaattg
gaaatggtcaagaaccaaattgttgaattctcaaatgctaacatatcatatagtgatgtt
gaaacagtcaaacactttggggccttacaaactgttatacacgagggcaaaacggaaata
gtaaagtgtgtcaatttgaaaggcgtttggaataaagaactgatgtgtaaggatggaatt
gttgcatttggagtagctttgggcggagcacttatgagttgggagttgtttcgatactat
tttcaaacagaggtggaacatcaaggtaagaccaaaagatcaaatcaaaaactgaaattt
agacaagcacgagatgccaaattagggagggaagtttacggagatgatggtacattggag
cactatttcggttcagcctataaacagaaagagaagaagggcaacaagacaagaggttta
ggtgcaaaaactcgtcgtttcacgcatatctatggttttgatccaactgaatacaatatg
attcgctttgttgatccgttgacaggagttacacttgacgaaacaacacagccagacatg
cagttagtgaaagaatattttcatcaaattagagaaaatcggatcaatgatgacgaatta
gaacgccaacatgtatattcgaatcctggcatccatgcgtattttattaagaatagtaca
aatagtgcgcttaaagttgatttgacggaacataatcctttactacaaacacgttcaaac
acattagcaggatttccggagagagaaaatgagttgagacagacaggcactccaattgaa
gtacagaagagtgaagttccaaggccgaatgaagtgaacgttgagcatgaaggattgacc
attttccgaggagttgctaactataacccaattacagataatatttgtttggtttgtaat
gaatccgaagggaaaaatatgacgatttatgggataggatatggtccttacttaataatc
aatagccatcttttcgagaataataatggtactttatcaatccaatcaacaagaggttta
tatgttgttaagaataccaccaaattgcaaataataccaattgaaagacgcgatattata
cttatacgtttaccgaaggatcatccgccatttactaagtcaattaaattcaataagcca
aataaacttgatcgagtagtgatgttgcgaatgaattatcaagaaggaagacacataccc
gaattctcagaaaattcaattatagttcaacagagtgacagtttttggaaacattggata
gcaaccaaacatggatactgtggtttgcccttagttaacactagaacaaaggaagttgta
ggtatacatagtttgagagcaacagatgatagtgtgaattattttgccgcaattaacgat
gatttcttgaataagttgaacatgccaattgaggacattcagtggacgagaggatggaag
tataatacaaatttgctatcttggggtggaatgtatatgaaaaacacgaaacctgcttct
atttttaacacaacgaagcagatagaagtagtttgtgaacactcagttgatgatgtgaaa
cccacgtggttaacaagacagtttaaaaataatttatctgtagttgggaagatgccaggg
aatttagtaacgaaacatgttgttaaaggcaagtgttcaatgtttcagttatacttagaa
gttgatgagaatgcacggaaatttttcgatccgctgcttggaaaatatgggaaaagttta
ttaaatagaaaagcgttcattcaggatttcactaaatacgacaaaccaataactgttggg
gttgtacaaacaaattattttgaaatagcgatatcagatgtaattaacctcctgcacaca
ctaggcattcgagattgtaattatgtaaccataccagatgaaatttatgattcattgaac
atgaaagcatcagtaggagctttgtatagcggaaagaagaaagattattttaaagatatg
acacaagaagagaaggcgcttttacttgaaaaatcttgtgaacgtttgtataaaggcgaa
ttaggactatggaacggatcattgaaagcagaaatacgccctatggagaaaatcttagcc
aataaaactagaacatttacagcagcaccattggaaacattattgggtgggaaagtttgt
gttgacgacttcaacaatcagttttatgaaaaccatcttaaaggaccgtggacagtaggc
atatcaaaattttacaaaggttgggatcgtttactcaggagtttaccggaaggatggata
tattgtgatgctgatggatctcaatttgatagttcgttatctccatatttgatcaatgca
gtacttcgagttcgtttagcatgtatggaagaatgggatatcggtgaagaattgttgaag
aatctttacactgaaatagtgtacacaccgattgcaacaccagatggcagcatcgtgaag
aaatataaaggtaacaatagtggccagccatcaacagtggtcgataacactcttatggta
attttagctttcaagtactctctacgtgtaaataatattgagtcacaagatgagtctagt
gttattagaatgtttggaaatggtgacgatttactaattgcagttaatccagaatatgag
taccttctagataatatgcatgaatactttggtgagcttggattgaattttgatttttcg
aatagaacacgtaataaagaagatttgtggtttatgtcacatagaggtttacttaaggat
ggtttatacataccaaaacttgaaaaagagaggattgttgcgattttagaatgggatagg
agtagcgaacctgagcatagactatcagctatttgtgcagcaattatagaatcgtggggt
tatgacgatcttatataccaagttaggaagttttatcagtgggttttagaacaagaaccg
tacaaagaactggcagctcaagggaaagccccatatctgtcggaaacagcattgagaaag
ttatacacagacgagcagatctcacagaatgaacttttcaattattatcgtgagatatac
gattcaattttatatgatggtaataatccaatcgaagtcgagcatcaaagtcgagttgac
acaggaacacccacaggtgacaatactggtgatacagggagtggttccggtagtggatca
ggttctggatctggtagtggtagtggctcaggaaattccggctctggtggaactggtggt
acaggtactggtggaacgagtggaaaaggctctggtggttctggtggaactggtgggact
gggtctggaactggtggaacaggaggaaaaggcactggcggaactggagataaaacagga
ggaacaggctctggtggctctggaagtgatgcaggaaaaggtggatctggaggaacaggt
aatacaggtggtggtggagatactggcaaacaggtcgctaatccaaaagataaagatgtt
gatacaggaacacctgggacattcacaattccaaaactaaagaaattatcccagaaaatg
caactaccaaaagttggagggaatgtaatattaaatgttagtcatttacttgtatataaa
ccacaacaggctgacatatcaaatacgcgagcgacacaagatcaattacagttttggtat
gatagaataaagcaagagtatgaagttacagacgaacaaatgaaaattttgatgaatggc
ttcatggtttgggcaatcgagaacggaacatcaccaaatatcaatggttattgggttatg
atggatggtgaaactcaagtggcataccctttaaaaccgatagtggaaaatgcaaagcca
acattaagacaatgcatgatgcacttcagtgatgcagcggaagcatacattgaaatgcgt
aacacagaacaaccgtacatgccaaggtatggtttgcttagaaatctgcaagataggagt
ttggcgcgatatgcattcgatttttatatggtaaactccaaaacaccaaatagagcgaag
gaagcacatatgcagatgaaagcagcagcggtccgtgggtcgaataatgaaatgttcggt
cttgatggaaacgtgggtgagaccacggaaaacacggaacgtcgcatggcaacagatgta
aataggaatacgcattcttataagggtgcgcgtatctaa
DBGET
integrated database retrieval system
