Vibrio gigantis: MID13_15070
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Entry
MID13_15070 CDS
T08202
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vgi
Vibrio gigantis
Pathway
vgi00300
Lysine biosynthesis
vgi00470
D-Amino acid metabolism
vgi01100
Metabolic pathways
vgi01110
Biosynthesis of secondary metabolites
vgi01120
Microbial metabolism in diverse environments
vgi01230
Biosynthesis of amino acids
Module
vgi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
MID13_15070 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
MID13_15070 (lysA)
Enzymes [BR:
vgi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
MID13_15070 (lysA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ULN64176
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All DBs
Position
1:complement(3335156..3336409)
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AA seq
417 aa
AA seq
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MDYFNYQEDGQLWAEDVALSQLAEQYGTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAV
KANSNLGVLNTLARLGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNI
KCFNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAP
AVYAFAQTLENLSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGITIKHLDVGGG
LGVVYRDELPPQPSDYAKALLARLENHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEHK
NFAIIDAAMNDLMRPALYQAWQDIVPVSPRQGEAVTYDLVGPICETGDFLGKDRDLVLEE
GDLLAVRSAGAYGFAMSSNYNTRSRAAEVMVDGDKTHLVRQREELTSLWELENILPE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttggattacttcaactatcaggaagatggccagctttgggctgaggacgtcgcactttca
caacttgcagaacaatatggtacaccgctgtatgtatattctcgtgcaacattagaacgt
cactggaacgcatttgactcatcggttggtgagcatccgcatctagtgtgttacgccgtt
aaagctaactcaaaccttggtgtattgaataccttagcgcgtttggggtctggctttgat
atcgtttctggtggtgagctagagcgtgttgtggctgcaggtggcgatccggcaaaagtt
gtattctctggtgtcggcaaaacagccgctgaaatgaaacgtgcgcttgagttaaacatt
aagtgtttcaacgtagagtctgagccagaactagagcgactgaataaagtagctggtgag
ctgggtgttaaggcgccgatttcactgcgtatcaacccagatgttgatgctaacactcac
ccttatatatcgactggtctgcgtgataacaagtttggtattgccttcgatcgcgcgcct
gccgtttatgcctttgcacaaacactcgagaacctgtctattcatggtattgattgtcat
attggctctcagctaacagacatcgaaccatttattgatgcgactgaccgcttgcttgct
ttgatcgaccaactacgtgctgatggtatcaccatcaaacaccttgatgttggtggcggc
ttaggtgtggtttatcgtgatgaattaccaccacagccttctgactacgcaaaagcctta
ttggctcgcctagagaatcattctgatctagagctgattttcgagcctggaagagcgatt
gctgcgaacgctggtgtattattaacgaaagtcgagttcctcaagccaacagagcataag
aactttgccatcatcgatgcagcgatgaacgacctaatgcgcccggcactttaccaagct
tggcaggatattgttcctgtgagccctcgtcagggtgaagccgtgacttacgatttggtt
ggtccaatctgtgagacaggggacttcctaggtaaagatcgtgaccttgttcttgaagaa
ggtgatctgttagcggttcgttctgcgggtgcttatggcttcgcgatgtcatctaactac
aacactcgttcgcgagcggctgaagtgatggtggatggcgataaaactcatttggttcgt
cagcgtgaagagcttacgagtctgtgggaacttgaaaacattcttccggagtaa
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