Variibacter gotjawalensis: GJW-30_1_00903
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Entry
GJW-30_1_00903 CDS
T05320
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vgo
Variibacter gotjawalensis
Brite
KEGG Orthology (KO) [BR:
vgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vgo03009
]
GJW-30_1_00903 (rlmD)
Enzymes [BR:
vgo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GJW-30_1_00903 (rlmD)
Ribosome biogenesis [BR:
vgo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GJW-30_1_00903 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Methyltransf_31
Methyltransf_25
Cons_hypoth95
Met_10
Peptidase_S26
BpsA_C
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
BAT58378
UniProt:
A0A0S3PR16
LinkDB
All DBs
Position
949840..951060
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AA seq
406 aa
AA seq
DB search
MAERFTIDHMGQRGDGVTRDGLFIAYTLPSEVVRAEAAEQPDRRTLVDVETPSADRIAPI
CRHFGVCGGCATQHWAGEPYRAWKHDLVASALSHAGIDTGVDPVIDAHGTGRRRVVFHAR
NSGDGLKVGFAAPRAHWIVPIEECPVLAPELGGAIELARRLAGALEPLSKPLDLHFTASD
TGLDVDIRGSGPLAPARANALAKLAAELRLARLTRHGELVGQRVTPVLRMGKAHVPLPSG
SFLQATREGEETLARLVLEHAGNAKRVADLFCGVGPFALRLAERASVTALDSDAGAIESL
AKASKTSGLKPITAAKRDLFRTPLTVQELKGFDAVVFDPPRQGAEAQVKVLAATKIKRVI
AISCSAVTFARDARILIDGGYRLKRVTPVDQFRYSAHVELVALFER
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
gtggctgagcgcttcaccatcgaccacatggggcaacgcggcgacggcgtgacgcgcgac
ggcctcttcattgcctacacgctgccgagcgaagtggtccgcgccgaagcggccgaacag
ccggatcgccgcacgctcgtcgatgtcgagacgccgagtgccgatcgcattgcgccaatc
tgtcgccatttcggtgtctgcggcggctgcgcgacgcagcattgggcgggcgagccgtat
cgcgcatggaagcacgatcttgtcgcgagcgcgctgtcgcatgccggaatcgacaccggc
gtcgacccggtgatcgatgcgcacggcaccggccgccgccgcgtcgtctttcatgcacgc
aacagcggcgacggcctcaaggtcggcttcgcggcgccgcgcgcacattggatcgtgccg
atcgaagagtgcccggtgctcgcaccggaactcggcggcgcgatcgaactcgcgcggcgg
ctcgccggcgcgttggagccgttatccaagccgctcgaccttcatttcacggcgagtgac
acgggactggatgtcgacattcgcggcagtgggccgctggcgccggcgcgcgccaatgcg
ctggcgaaacttgccgccgagcttcggctcgcgcggttgacgcgtcacggcgaactcgtc
ggtcaacgcgttacacccgtgctgcgcatgggcaaggcgcatgtgccgctgccgtccggc
tctttcttgcaggcgacgcgagagggcgaggaaacgctggcgcggctggtgctcgagcat
gccggaaacgcgaagcgcgtcgccgatcttttctgcggcgtcgggccatttgcgttgcgg
ctcgccgaacgtgcgagcgtcacggcgctcgacagcgatgccggtgcgatcgagtcgctc
gctaaggcttcgaaaacatcggggctcaaaccgataacagccgcaaagcgcgatctcttc
cgcacgccgctgaccgtgcaggagctgaagggcttcgacgccgtcgtcttcgatccgccc
cgtcagggcgccgaagcgcaggtgaaggtgctcgccgcgaccaaaatcaaacgcgtcatc
gcaatctcatgcagcgccgtgacattcgcgcgcgatgcccgcatcctgatcgacggcgga
tatcgcttgaagcgcgtcacgccggtcgatcagttccgctactcggcgcatgtcgaactc
gttgcgctgttcgagcgctag
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