Vulgatibacter incomptus: AKJ08_2883
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Entry
AKJ08_2883 CDS
T04035
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKJ08_2883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_2883
Enzymes [BR:
vin01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AKJ08_2883
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AKJ08_2883
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AKJ08_2883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
DZR
SseC
zf-TFIIB
NFACT_N
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AKU92496
UniProt:
A0A0K1PGF1
LinkDB
All DBs
Position
complement(3405724..3406542)
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVEFAARCLRRWMEGRTIERASAPDTRIFRGSSRDAFEKELSGRTLQGIDRRGKY
LLLSFDDDVGMLSHLGMTGKWLRRSPDDPPPDHARATLSLEGDDLVVYDDQRLFGRIAIH
RASELLKLPVIRKLGPDPLLDGLDPERLHEKLQRTARTVKVAIMDQAVIAGLGNVQATEA
LFRAQIHPARVAKTLSLAEVKDLVRAIDEAIEHTLEWTGGDEIKYVEEPGSENPFLVYQR
AGEACPRCGNELQQIVLGGRSSVFCPHCQPLE
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgccggaagtcgagttcgccgcccggtgtcttcgccgctggatggagggc
cgcaccatcgagcgcgcctccgcgccggacacccggatcttccggggctcgagccgtgac
gccttcgagaaggagctgagcgggcgcacgctccaggggatcgatcggaggggcaagtac
ctgctcctctccttcgacgacgacgtgggcatgctcagccacctgggcatgaccggtaag
tggctgcggcgctcccccgacgatccgcctccggaccacgcgcgggcgacgctctcgctc
gagggagacgacctcgtcgtctacgacgaccaacgcctctttggacggatcgccatccat
cgggcgagcgagctcctgaagctcccggtgatccgcaagctcggccccgatccgctcctg
gacggcctcgatccggagcggctccacgagaagctgcagaggaccgcacgcacggtgaag
gtcgcgatcatggatcaggccgtgatcgccgggctcggcaacgtgcaggcgaccgaggcg
ctcttccgcgcccagatccacccggcgcgcgtggcgaagacgctctcgctcgcggaggtg
aaagacctcgtccgcgcgatcgacgaagcgatcgagcacacgctcgaatggacgggtggc
gacgagatcaaatacgtcgaggagccggggagcgagaaccccttcctggtctaccagcgg
gcgggagaggcctgcccccgctgtggcaacgagctccagcagatcgtgctgggagggcgc
tcgagcgtcttctgcccgcactgtcagcctctcgagtag
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integrated database retrieval system
