Varroa jacobsoni: 111265943
Help
Entry
111265943 CDS
T07417
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
vja
Varroa jacobsoni
Pathway
vja04140
Autophagy - animal
vja04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111265943
04148 Efferocytosis
111265943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vja04131
]
111265943
Membrane trafficking [BR:
vja04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
111265943
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
Vps39_2
CNH
Clathrin
DUF5301
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
111265943
NCBI-ProteinID:
XP_022698722
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MILVPVWVIGNPDSMYKAYSLESVLQNLPPTFSIECAATYRDTLLLGTKQGYLTTFRVTK
AHPPNSESPLDVRLHKTFKSFSKKPINELVVVEDHDLLISLSDQTVNVHRISETFPLLRQ
FKGVTTFACGTQRVKRHNDGSDNVSPSDRNYTVVRLCIAQRRRIQYFYWKHNDSAFIEHP
YEHTLPDVPRIMVWSSKEHLIVGFKTSYVLLKANKTGDLRELRTISRQPEPLITRLQDDS
YAVLSEKNVHLVNMNGDRIQIEPIIMSELPVSLAYDYPYLMGLSPAGVEVHTINPTLTIQ
TIQITQTPKPLGLIVWKSGMVFVISTNNVWCLVRASVGDQLSACKDQKQFHLALMLAKLL
DASDADKARCKYHLENLLAFDFFAKGQYQKAFKLFEEIRTDPVHVIGLVPSLLKEQYRKM
LQYPASVPKLDESQLTTAMTELIVYLSSARRFIKSQECDNVQVGGILEGINAVRPKKLLL
QIIDTTMLHLYINVNPNLVAALLSFKDNHCHLEESEALLKEHQKIVERIILYEQKGAHHK
ALQLLSEQALIPSSPLHGHEHTIAYLQRLSGDHFDLILEYAKWVIDAFPDDGLKIFTEGT
CGRELLPRERVLQFLEKESPTLIVRYLEHLILHWHDDNVRFHNLLIHKYREQIIRITNSE
LNDPSVTSIREKLVDFLRTSNRYTPSIFPQWFLNDKLYLECAIVMGKLGRHQDALTIYIH
VLRDLKRAEDYCVEQYLGKKACDRNVFIILLTLYITPAKICLKALDISAPAAESDPPDIM
EILNLLDRHVDKLDPLRAIEMLPPEVPLQKLEEFITKLLKEQSIQLSKLRVLNALLLSDN
VKAKLLKFNLVKFCVTIDDSKLCDICQRRINRSVFVHTEKGQIVHYACHNKTLSGSESVD
N
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgatattagtgcccgtttgggttatcgggaaccctgactcaatgtacaaggcctattca
ctcgaatctgtgctacaaaatcttccacccacgtttagcattgagtgtgcagctacctac
agagatacacttttgcttggcacaaagcagggttacctcacgacgtttcgggtgaccaag
gcacatccaccgaactcggaaagcccgctcgacgtcaggcttcacaaaacctttaaaagc
ttctcaaaaaaacctataaacgagctggttgtagttgaagatcacgatcttctgatcagc
ctatcggatcagactgttaacgtgcatagaatttccgagacattcccacttctacggcag
ttcaaaggggttaccacgttcgcttgcggcacgcaacgggtcaagcgccacaatgatgga
agcgacaacgtcagtccaagcgacagaaattacacagtggtgcgattgtgtatcgcacag
cgtcggaggatccagtacttctattggaaacataacgatagcgcgtttatagagcatccc
tatgaacacacactgcctgacgttcctcgtataatggtttggtcaagcaaggagcatctt
atcgttggcttcaagacctcctatgtcctactcaaggcgaacaaaacgggcgaccttcgg
gagctacgcactatcagtcgtcaaccagaaccactcattacacggttgcaggacgacagc
tatgcagtgcttagcgaaaaaaacgtccacctcgtaaatatgaatggtgatcgaattcag
atagaaccgatcatcatgagcgaattgcctgtctcactagcttacgactatccctaccta
atgggtctttcgccagctggagtcgaggtgcatacaataaacccaaccctaacaattcag
acaattcagataacgcaaacaccaaagccattagggcttatcgtgtggaaaagtgggatg
gtattcgtcatctctacgaataatgtctggtgccttgtccgagcttcggtaggcgaccag
ttgtccgcgtgtaaagaccagaaacaattccatctggctctcatgttggcaaagctgtta
gatgcatcggatgcagataaagcgcgttgtaaatatcaccttgagaatttgcttgccttc
gactttttcgccaaaggacaatatcagaaagcgtttaagctgtttgaagagattcgtact
gatcctgtccatgttatcgggttagttccatcgctactcaaagagcagtaccgaaaaatg
cttcaatacccggcttcggttccgaagctcgatgagtctcagctgacaaccgctatgacg
gagctgattgtgtacctcagttctgcccgaagatttataaagagtcaggaatgcgataat
gtccaagtcggaggtatcctcgagggaatcaatgctgtccgtccgaaaaagctactccta
caaatcatcgacacgacgatgcttcacctctacatcaatgtgaatccaaaccttgtagca
gctctgctaagctttaaagataatcattgccatcttgaggagtcagaggcactgctaaag
gagcaccaaaaaattgttgagcgtataatcctttacgaacagaaaggtgcccatcacaaa
gcgcttcaactgctatccgaacaggcgcttattccgagctcaccgcttcacggtcatgag
catacgattgcctatcttcagcgattgtcgggtgaccacttcgacctcatacttgaatac
gcaaaatgggttattgatgcatttcccgatgacggactgaaaatctttactgagggtact
tgcggccgtgaacttttaccaagagaaagggtgcttcagttcttggagaaggagtcacct
acgctgattgtacgttatcttgagcatctcattcttcactggcatgatgataacgtccga
tttcacaatttgctaatccacaagtatcgtgaacagatcatccgtataactaacagcgaa
ctcaacgacccttcagtgacatctatacgtgaaaaacttgtagactttttgcggacatcg
aatcgctacacaccgtcgatatttcctcagtggtttctcaacgacaagctataccttgaa
tgtgccattgttatgggtaaacttggtcgacatcaagatgcattgacaatttacattcac
gttctccgggatttaaaacgtgccgaagactattgcgtcgagcagtacttaggaaagaag
gcctgcgacaggaacgtttttatcatacttttgacactgtacattactccggcaaaaatt
tgccttaaggcactggatattagtgctcctgcggcagagtccgatcctcccgacattatg
gaaattcttaatctgctcgatcgccatgtggacaaattggatccgttgcgggctatcgaa
atgcttccaccagaagtaccgttacaaaaactggaggaattcattacaaaattactgaaa
gagcaatctatacaattatctaagttgcgtgtccttaatgctcttcttcttagtgacaac
gttaaggcgaagttgctaaaatttaacctagtgaaattctgcgtaactattgacgattcg
aaattatgcgatatctgccagcggcgaatcaaccgttctgtattcgtgcacaccgagaaa
ggacaaattgttcattatgcgtgccataacaaaacattatcaggcagcgaaagtgttgat
aactag
DBGET
integrated database retrieval system
