Vulpes lagopus (Arctic fox): 121473623
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Entry
121473623 CDS
T07435
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg04151
PI3K-Akt signaling pathway
vlg04510
Focal adhesion
vlg04512
ECM-receptor interaction
vlg04611
Platelet activation
vlg04820
Cytoskeleton in muscle cells
vlg04926
Relaxin signaling pathway
vlg04933
AGE-RAGE signaling pathway in diabetic complications
vlg04974
Protein digestion and absorption
vlg05146
Amoebiasis
vlg05165
Human papillomavirus infection
vlg05205
Proteoglycans in cancer
vlg05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
121473623 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121473623 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121473623 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121473623 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
121473623 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
121473623 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
121473623 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
121473623 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
121473623 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
121473623 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
121473623 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
121473623 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vlg00536
]
121473623 (COL1A1)
Glycosaminoglycan binding proteins [BR:
vlg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121473623 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
121473623
NCBI-ProteinID:
XP_041582093
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All DBs
Position
12:35257287..35274643
Genome browser
AA seq
1460 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD
NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETTGVEGPKGDTGPRGPRG
PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS
GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER
GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR
GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE
GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS
GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP
GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP
GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP
GAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP
GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP
GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA
GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA
GPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE
GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP
GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP
GRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGAR
GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP
GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP
PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM
CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPQVAQKNWYISKNPKEKRHV
WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL
KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP
LDVGAPDQEFGMDIGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc
ctcaggtactatgaccgagacgtatggaaacccgaggcctgccggatctgtgtctgcgac
aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgccccggcgcc
caagtccccccgggcgagtgctgccccgtctgccccgacggcgaggcgtcacctaccgac
caagaaaccacaggagtcgagggacccaaaggagacactggcccccgaggtccgagggga
cctgccggcccccctggccgagatggcatccccggacagcctggacttcccggaccccct
ggacctcccggaccccctggaccccctggcctcggaggaaactttgctccccaaatgtct
tatggctatgatgagaaatcaactggaggaatctccgtgcctggccccatgggtccttct
ggtcctcgtggtctccctggcccccctggtgcacctggtcctcaaggtttccaaggcccc
cctggtgaacctggcgagcctggagcctcaggtcccatgggtccccgtggtccccctggc
ccccctggcaagaacggagatgacggtgaagctggaaagcctggtcgtcctggtgagcgt
gggcctcctggacctcagggtgctcggggattgcctggaacagctggccttcctggaatg
aagggacacagaggtttcagtggtttggatggtgccaagggagatgctggtcctgctggc
cccaagggtgagcccggtagccccggtgaaaatggagctcctggccagatgggcccccgt
ggtctgcctggtgaaagaggtcgccctggagcccctggccctgccggtgctcgtggaaac
gatggtgctactggtgctgctgggccccctggtcccactggccccgctggtcctcctggc
ttccccggtgctgttggtgctaagggtgaagctggtccccaaggagcccgtggctctgaa
ggtccccagggcgtgcgtggtgagcccggcccccctggccctgctggtgctgccggccct
gccggaaaccccggtgctgatggacagcctggtgctaaaggtgctaacggcgctcctggc
attgctggtgctcccggcttccccggtgcccgaggcccctctggaccccagggccccagc
ggtcctcctggtcccaagggtaacagcggtgaacctggtgctcccggaaacaaaggagac
actggtgccaagggagagcccggccccactggtattcaaggtccccctggccctgctggg
gaagaaggaaagcgaggagcccgaggtgaacctggacccactggcctgcccggaccccct
ggcgagcgtggtggacctggtagccgtggtttccctggtgcagatggtgtcgctggtccc
aagggtcccgctggtgaacgtggttctcctggtcccgctgggcccaaaggttctcctggt
gaagctggtcgccctggtgaagctggtctgcctggtgccaagggtctgactggaagtcct
ggcagccctggtccagatggcaaaactggcccccctggtcccgctggtcaggatggtcgc
cccggacccccaggcccccctggtgcccgtggtcaagctggtgtgatgggattccctggg
cctaaaggtgccgctggagagcctggcaaggctggagagcgtggtgtccctggcccccct
ggtgctgttggtcctgctggcaaagatggagaagcaggagctcaggggccccctggccct
gctggccccgctggcgagagaggtgaacaaggtcctgctggctcccccggattccagggt
ctccctggacctgctggtcctcccggcgaagctggcaaacccggtgaacagggtgttcct
ggcgaccttggtgcccccggcccctctggagcaagaggcgagagaggcttccctggtgaa
cgtggtgtgcaaggtccccccggtcctgcaggtccccgaggagccaacggtgcccctggc
aatgatggtgctaagggtgatgctggtgcccctggagcccccggtagccagggcgctcct
ggccttcagggaatgcctggtgaacgaggtgcagctggtcttcctggccctaagggtgac
agaggtgatgccggtcccaaaggtgctgatggctctcctggcaaagatggtgtccgtggt
ctgactggccccattggtcctcctggccctgctggtgcccctggtgacaagggtgaagct
ggtcctagcggccctgctggtcccactggagctcgtggtgcccccggagaccgtggtgag
cctggtccccctggtcctgctggcttcgctgggccccccggtgctgatggccaacctggt
gctaaaggtgaacccggtgatgctggtgctaaaggcgacgctggtccccctggccctgct
ggacccactggaccccccggccccattggtaacgttggtgctcctggacccaaaggtgct
cgtggcagcgccggtccccctggtgctactggtttccctggtgctgctggccgcgtcggt
ccccccggcccctctggaaatgctggaccccctggccctcctggccctgctggcaaagaa
ggcggcaaaggcccccgtggtgagactggccctgctggacgtcccggtgaagtcggtccc
cctggtccccccggccctgctggcgagaaaggatcccctggtgctgatggacccgctggt
gctcccggcactcccggacctcaaggcattgctggacagcgtggtgtggtcggtctgccc
ggtcaacgaggagaaagaggcttccctggtcttcccggcccctctggcgaacctggcaaa
caaggtccttctggagcaagtggtgaacgtggtccccctggtcccatgggcccccctgga
ttagctggaccccctggcgagtctggacgggagggatctcctggtgctgaaggctcccct
ggacgagatggttctcctggccccaagggtgaccgtggtgagaccggccctgctggaccc
cctggtgcccccggtgcccctggtgctcctggccccgtcggccctgccggcaagaacggt
gaccgcggtgagactggtcctgctggtcctgctggcccgatcggccctgttggtgctcgt
ggtcctgctggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggtgac
agaggcataaagggtcaccgtggcttctctggtcttcagggtcctcctggccctcccggc
tctcctggtgaacaaggtccttctggagcttctggtcctgctggcccccgaggtccccct
ggctctgctggttctcctggcaaagacggactcaacggtctcccaggccccattggcccc
cccggtcctcgtggtcgcactggtgatgctggtcctgttggtccccccggccctcctgga
ccccctggtccccccggtcctcccagcggcggtttcgacttcagcttcctgccccagcca
cctcaggagaaggctcacgatggcggccgctactaccgggccgatgatgccaacgtggtc
cgtgaccgtgacctcgaggtagacaccaccctcaagagcctgagccagcagatcgagaac
atccggagccctgaaggaagccgcaagaaccctgcccgcacctgccgcgacctcaagatg
tgccactctgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctg
gatgccatcaaggttttctgcaatatggagacaggtgagacctgcgtataccccactcag
ccccaggtggcccagaagaactggtacatcagcaagaaccccaaggagaagagacacgtc
tggtacggcgagagcatgaccgacggattccagttcgagtatggtggccagggctccgat
cctgccgatgtggccatccagctgaccttcctgcgcctgatgtccaccgaggcctcccag
aacatcacctaccactgcaagaacagcgtggcctacatggaccagcagaccggcaacctc
aagaaggccctgctcctccagggttccaacgagatcgagatccgggccgagggcaacagc
cgcttcacctacagtgtcacctacgacggctgcacgagtcacactggagcctggggcaag
acagtgatcgaatacaaaaccaccaagacctcccgtttgcccatcatcgatgtggcacca
ttggacgttggcgccccagaccaggaattcggcatggatattggccctgtctgcttcctg
taa
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