Vulpes lagopus (Arctic fox): 121482421
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Entry
121482421 CDS
T07435
Symbol
RTL9
Name
(RefSeq) retrotransposon Gag-like protein 9
Organism
vlg
Vulpes lagopus (Arctic fox)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Retrotrans_gag
DUF4939
Motif
Other DBs
NCBI-GeneID:
121482421
NCBI-ProteinID:
XP_041596284
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Position
X:83531373..83538976
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AA seq
1383 aa
AA seq
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MADMSIPLHSLRFNNMLREENVDPQNRGAAFSGPVLETQAEVQILHSHVQPIISTSASDP
GGMSAQLMTSPAFDAMSTPLMGAPNSGALSPPLMPASDSGALSPLLMPAPDAEALSPLLM
PASDSGTLSPLLSTSDYGLMSPGLMTIPDFGTMSAALMAAAHPAEISPLAMPASSSGAMS
APMMSTPSSEAMSAPLMLAPDPGEVSSLQISDINPGAMSTQPMPAPGSEAMSPLQITDED
TEAMSKVLMTALASGEIPSLLMSGTDSEAISSLIMSALASETTSVQPTSTQDSGEMSTQL
MSGPDSGRISSPLMSAPGSGAMSTPLLSVPDAGEASTVPKAAPDTETVSPLLITALTSGV
MPTQLMSAQDSVVMPPQLTPNLESQIMSTSPMTAATSGGMSTAPVRVSDSGPMSISCMRA
LASGNVPTLLKTVPDSVALSTPPMMVTTSGAMSTEQMSTMASRVMSTQFTMARTSGAVST
GFMKATTTGAMSTPRMRSPASVMMSTPLRRVPASGAVSTHPITAQASETMSTPQLSAPAS
GAMSTLQMRAPVSGTMSMSQKRASASGVTAVPQMRASASGAVSTPRMTAKASRAMSTLLM
RDTASGVMSLPQMRAMASGTLSKPLTTSKASEAVFMQQITTTASGEVSTMLMRDTASGAL
SVRQMTDIASVGMSTPLMRAPASGDMSIPQMTAAASGTMSMPLMGAPGPGGIPTALLRAT
ASGKMPSQPMSTHDSGGMSMSFMRSMTSGGMSSLQMQTPVSDMMSTPKMRVPASGMMSIP
LMRAPDPGEMSALLTRALSSGEMSPPLMRPPVSGERSTSRRVPAYGAMSIPPMMAPAPGM
MPMPQMRAAVPRAVSTPLMRSTASEVMPMPQMTATASGGVALPLMRTPASGATSMPQMMP
AASGEMCMLSMRAPTSGVMSPPLVRAPVSGIMTTPLRRPSASEAVCAEIWRGPASGNMSP
AQMKAMASGEMSKPLMRATAPGTMPMPLMSAVASGDMSVPLMKSMASGAVFTLQTRVTNS
GSMSLPQTTHTTSGRMPAPTMTASASGMMSMPLVRATAPGGISVPQMRTPVPGAMSTPQI
AAAASGTMSILEIKATDSGETSASHVTITASGSKSTPRTTAPTTETMKPPPEEVPSFGML
TPALCYLLEEQEAARGACSVEEEMEVNEEKQMKGFLNDSEKMAFLVSLHLGAAERWSILQ
MEVGNPLSNENKSFLNRSQGLYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARHLS
WSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGSSSQV
LLSACKRNNEEAMENELNSYQQTEEHQHVPKRCYYLKEHGDPQEGLHDHLRQSTGHNKAP
TNK
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatgtccatacctttacattcactccgattcaacaatatgctgagggaagaa
aatgttgacccccaaaacaggggggcagccttctctggaccagtactagaaactcaagca
gaggtccaaatcctgcattcccatgtacagcctataatctcaacatcagcgtcagaccct
ggagggatgtctgcacagttgatgacctccccagcctttgatgccatgtctacccctcta
atgggagcaccaaactctggagcactgtccccaccactgatgccagcctcagactctggg
gcactgtccccattgctaatgccagctccagatgcagaagcactgtcccctttgctaatg
ccagcctcagattctggaacgttgtccccattgctgtccacttcagactatggattaatg
tccccagggctgatgacaattcccgactttggaacaatgtccgcagcactaatggcagca
gcacatccagcagagatctcaccattggcaatgccagcttcatcctctggagcgatgtcc
gcacctatgatgagcactccatcctctgaagcgatgtccgcaccattgatgctggcccca
gatcctggagaggtatcttcactccaaatttcagacataaaccctggagcgatgtccaca
cagccaatgccagctccaggctctgaggccatgtcaccattgcaaattacggatgaagac
actgaagcaatgtccaaagtcctaatgactgctttggcctctggagagataccttcactg
ctaatgtcaggcaccgactcggaagccatatcctcactgataatgtcagccttagcttca
gaaacaacatcagtccagccaacaagcacccaagactctggggagatgtccactcagcta
atgtcaggcccagattccggaagaatatcttcaccgctaatgtcagctccaggttctgga
gccatgtctacaccactcctgtcagtcccagatgctggggaggcatccacagtgccaaag
gcagctccagacactgaaacagtgtccccactgctaattacagccctaacctctggagtg
atgcccacccagctgatgtcagcccaagactctgtagtgatgcctccacagctaacacca
aatctagaatctcaaatcatgtctacttcaccaatgacagcagcaacctctggggggatg
tccacagcaccagtgagagtctcagactctggaccaatgtccatatcgtgcatgagagct
ctagcctctggcaatgtgccaacattgctaaagacagtcccagactctgtagcattgtcc
accccaccaatgatggtcacaacctctggagccatgtccactgagcaaatgtcaaccatg
gcctctagagtcatgtctacacagttcacaatggccagaacttctggagcagtgtctaca
ggctttatgaaagcgacaaccactggggcaatgtccacaccacgaatgagatccccggcc
tctgtgatgatgtccacacccctaaggagagtcccagcctctggggcagtgtccacacac
ccaatcacagcccaagcatctgagacgatgtccaccccgcaactatcagccccagcctct
ggggcaatgtccacactgcaaatgagagcccctgtctctggaaccatgtctatgtcacag
aagagagcctcagcctcaggagtgacagctgtaccacaaatgagagcctcagcctctgga
gccgtgtccaccccacggatgacagccaaagcctccagagcaatgtctacactgttaatg
agagacacagcctcaggagtgatgtccctgccacaaatgagagctatggcctcgggcacg
ttgtccaaaccactaacgacatccaaagcctcagaagcagtgttcatgcagcaaatcaca
accacagcttctggagaggtctccaccatgctaatgagagacacagcttctggagctctg
tccgtccggcagatgacagacatcgcctctgtggggatgtccacaccactaatgcgagcc
ccagcctctggagacatgtccataccacagatgacagctgcagcttctggaacgatgtcc
atgcctctaatgggagccccaggccctggaggaatacccacagcattactgagagccaca
gcctctggaaagatgcctagtcagccaatgagcacccacgactctggagggatgtccatg
tcgttcatgagatccatgacctctggagggatgtcctcactgcagatgcaaacaccagtt
tctgacatgatgtctacaccaaaaatgagagtcccagcctctgggatgatgtccatacca
ctaatgagagccccagaccctggagagatgtctgcactgctcacaagagctttgtcctct
ggagagatgtccccaccactaatgagacccccggtgtctggagagagatccacatctcgg
agagtcccagcttatggagcaatgtctattccaccaatgatggctccagcccctggaatg
atgcccatgccacaaatgagggctgcagtccccagagcagtgtccacaccgctaatgaga
tccacagcctctgaagtgatgcccatgcctcaaatgacagccacagcctcaggaggggta
gccctgccactaatgaggaccccagcctctggagcaacgtccatgccacagatgatgcct
gcagcttctggagagatgtgcatgctatcaatgcgagctccaacctctggagtaatgtcc
cccccactagtaagagcccctgtctctggaatcatgaccacaccactaaggagaccttca
gcctctgaagctgtgtgtgcagagatatggagaggtccagcctctggaaatatgtcccct
gcacaaatgaaagccatggcctctggagagatgtctaagccattaatgagagccacagcc
cctggaacgatgcccatgccattgatgtcagccgtggcttctggagacatgtctgtgcca
ctaatgaaaagcatggcctctggggcagtgttcacactgcaaacaagagtcacaaattct
ggatccatgtccttgccacaaacaacacacacaacttccggaaggatgcctgcaccaaca
atgacagcctcagcttctggaatgatgtccatgccacttgtgagagccacagcccctggg
gggatttccgtgccacagatgaggaccccggtcccaggagccatgtccacaccacagata
gcagccgctgcctctggaacgatgtccatcctggaaatcaaagccacagactctggagaa
acatctgcttctcatgtcaccatcacagcgtctggatcaaagtccacaccacgcacaact
gccccaaccaccgaaacaatgaagccaccaccagaggaagtcccatcctttggcatgctg
accccagcactctgttacctcttagaagaacaggaagcagcccggggtgcctgctcggtg
gaggaggagatggaggtcaatgaggagaagcaaatgaagggctttttgaacgactccgag
aaaatggcatttctggtgtctctgcatctgggggcagcggagaggtggtccatcttgcag
atggaggtaggaaaccccctctccaatgaaaacaaatccttcctgaacagatcacagggc
ttatatgactctctctccgagatagacatcctcagtgctgttctttgccaccccaagcag
ggccagaagtccgtccggcagtacgccactgacttcctgctgctggcccgacatttgtct
tggtctgatgccattctacggaccaggtttctggaaggactctcggaagctgttaccacc
aaaatgggccggatcttcctgaaggtggccggcagcctaaaggagctgatagacaggtct
ctctacactgagtgccagctggctgaggagaaggattccccgggcagctccagccaggtt
ctgctgtcagcctgtaaacggaataatgaggaggcaatggagaatgaactgaactcttat
caacagaccgaggagcaccagcatgttcccaaacgctgttactacctgaaagagcatgga
gaccctcaagagggtctgcatgaccaccttcgacagagcacaggccataacaaggccccc
accaacaagtaa
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