Micromonospora maris: VAB18032_10310
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Entry
VAB18032_10310 CDS
T01471
Name
(GenBank) DNA ligase D, 3'-phosphoesterase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vma
Micromonospora maris
Pathway
vma03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VAB18032_10310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vma03400
]
VAB18032_10310
Enzymes [BR:
vma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VAB18032_10310
DNA repair and recombination proteins [BR:
vma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VAB18032_10310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AEB43180
UniProt:
F4F7C2
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All DBs
Position
complement(1245668..1246714)
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AA seq
348 aa
AA seq
DB search
MADRLEEYRRKRDATRTPEPVPAERRRRRSGGDRRRFVIQQHHARSLHWDLRLEHDGVLA
SWAVPRGLPREPGRNHLAVHTEDHPMEYLDFAGEIPAGEYGGGQMIIHDRGTYHCEKWQE
REVVVDLRGDRTAGRYVLFATGGRDGRDWMVRRTDPAPPGWTSMPDLVAPMHTTSATRLP
NDPANWGYELSWDGVRAVAYVSGGRLRLLSATGEDITGEYSWLRPMAETLAPTEAVLDGV
LVRIDRAGRVRPARGGRGTTDAQYLLVDLLWLEGSTSTDLPYRQRRELLEALALTGPHWQ
TPPWFPGSGAEARHTAREQGLPGVIAKRLDSVYEPGRRSRAWRRIEAS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaccggctggaggagtaccggcgcaagcgcgacgcgacgcgtaccccggaaccg
gttccggcggaacgacggcgccgccgctccggcggcgaccggaggcggttcgtgatccag
cagcaccacgcgcgcagcctgcactgggaccttcggctggagcacgacggggtgctcgcc
tcctgggcggtgccgcgcggcctgccccgtgaacccggccgcaaccaccttgccgtgcac
accgaggaccacccgatggagtacctcgacttcgccggtgagatcccggccggcgagtac
ggcggcggacagatgatcattcacgaccggggcacctaccactgcgagaagtggcaggag
cgcgaggtggtcgtggacctgcgcggcgatcggacggccggccggtacgtgctgttcgcc
accggcggccgggacggccgggactggatggtgcggcgcaccgacccggcgccgccgggc
tggacctccatgcccgacctggtcgcgccgatgcacaccacctccgccacccggctgccg
aacgacccggcgaactgggggtacgagctgagctgggacggcgtccgggcggtggcgtac
gtctcgggaggccggttgcggctgctctccgcgacgggtgaggacatcaccggcgagtac
tcctggctgcggccgatggccgagacactggcgcccaccgaggccgtactcgacggtgtg
ctggtgcgcatcgaccgggccgggcgggttcggccggcccgcggcggacgtggcaccacc
gacgcccagtacctcctggtcgacctgctctggctggaagggtcgaccagcacggacctg
ccgtaccggcagcgccgggagctgctcgaagcgctggccctgaccggcccgcactggcag
actccgccgtggttccccggcagcggcgccgaggcccggcacaccgcccgcgaacagggc
ctgcccggggtgatcgcgaaacggttggactcggtctacgagccgggtcggcgcagccgg
gcgtggcgtcgcatcgaggcgagctga
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