Vibrio mimicus: AL543_07860
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Entry
AL543_07860 CDS
T04381
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL543_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmi03019
]
AL543_07860
03016 Transfer RNA biogenesis [BR:
vmi03016
]
AL543_07860
Enzymes [BR:
vmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AL543_07860
Messenger RNA biogenesis [BR:
vmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL543_07860
Transfer RNA biogenesis [BR:
vmi03016
]
Prokaryotic type
tRNA degradation factors
AL543_07860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
eIF-3_zeta
Motif
Other DBs
NCBI-ProteinID:
AMG02966
UniProt:
A0A2J9UZ08
LinkDB
All DBs
Position
2:complement(375867..378332)
Genome browser
AA seq
821 aa
AA seq
DB search
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDYVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLGEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKELVPHLEELHRM
YQVLKGARDERGAIEFETVETKFIFNAQRKIESIEPVIRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKHEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTAKKRAEEARAKAQGKKEAATKGGRGKAPVKSEAKP
QVEATRHPDGEGRSKPKKTKAPKKRKDQARKKTSKARDKTK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctgaaactcgagggtgaagagcaatatgaagggttgcgt
cgccgcctacgggcaatggaacgagatggccaactggtgttcacacgccgccaatgctat
gccttgccagaaaagttagaaatggtgaaaggctatgtgattggccacaaagatggccat
ggctgggtacgtccagaaggaagcctcaataaagaaggcgatatcctgttacctcatcat
cagatgcgtacgctaatccatggtgattatgtattagtgcaaccaagcggtaccgataaa
cgtggccgcaaagaggggcgtctggtacgcattttagaagagcgcaatggccaaattgtt
gggcgtttcttctttgaatatggttattcctacgtggtgccggatgactcacgtattcac
catgacattttgatcccgaatgacttacgtgccggagcgcgcatgggcaatgtggtggtg
attgaaattactgatcgtggcacgcgcaatcgcggcatgatgggtaaagtggttgaagtt
cttggcgaaaatatggcgccgggtatggaaacacaaattgctattcgcactcaccagatt
cctcatgaatggccagcagaagttgaacaacaagttgctgggctaggcgaagaagtgcct
gaagaagccaagcaaggtcgtgtcgatctgcgcgctttgccattggtgacgattgatggt
gaggatgcccgcgacttcgatgatgcggtgtattgtgaagcgaaaaaaggtggcggctgg
cgtttatgggtggcgattgccgatgtgagctattacgtacgccctgatacagcgctcgat
aaagaggcgatcaatcgcggtaactcggtttacttcccatcgcaagttgtcccaatgctg
cctgaagtgctgtcgaacggcctctgttcactcaacccacaagtggatcgcttgtgtatg
gtgtgtgaaatgacggtatcggaaacgggtaaactttctggctacaagcattatgaagcg
gtgatgaactcacacgctcgtctgacttacaccaaagtgcacgaaatcctcgaaggggat
gaagagttgcgtgagcgctacaaagagctggttccgcatcttgaagagctacatagaatg
tatcaagtgctcaaaggcgcgcgtgatgagcgtggcgcgattgagtttgaaaccgtcgaa
accaaattcatcttcaatgctcaacgtaaaattgaaagcattgagccggtgatccgtaac
gatgctcacaagctgattgaagagtgtatgatcctcgccaacatcgcctctgcctctttg
gtggagaaagcgaaagaagcggcgttgtaccgagtccatgagccaccaggtgaagaacgt
ttaacgggcttccgtgatttcctcggtgagctagggttggatctctctggtggccttgag
ccgtcaccgactgattacgcgaatctgatgaaacaaatcggcgagcgtccggacaaagaa
ctgatccaaaccatgctgctgcgctcgatgaagcaagcggtgtataacgcggataacgcg
ggtcactttggcttggcgttgaaacgctacgcgcactttacttcgccaatccgtcgttat
ccggatttgctgctgcatcgtgcgatcaaatacttgattgctaagcatgaaggacgtaac
caagaccgttggacaccaacaggcggttatcactattccttcgatgatatggatttctac
ggcgagcagtgttccatgacagagcgccgagcggatgatgcgacgcgtgaagtggctgat
tggctcaaatgtgagtacatgcaagaccatgtgggtgaagagcttgaaggtgtggtcgct
aacgtgaccagtttcggtttcttcgtacgtctaactgagctgcatattgatggcttggtg
catatttcgactttggctaacgattactaccattacgatccgatcggacagcgtctggtt
ggtgaaagctttggcgccatctaccgccttggtgatgcagtgaaagtaaaagtgttggcg
gtaaaccttgatgatcgccaaattgactttgaattggtcgaaacaagtcgtaagctacgc
ggccaaggtaaaacggctaagaaacgtgccgaagaagcccgagcgaaagcacaaggtaaa
aaagaggcagcaaccaaaggcggccgtggcaaagcgccagtgaagtcagaggcgaaacct
caggtagaagcgacacgccacccagatggcgaaggtcggagtaaaccaaaaaagactaaa
gcgccgaaaaaacgcaaagaccaagctcgtaagaaaaccagtaaagcacgagacaaaacc
aaatag
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