Virgibacillus necropolis: CFK40_07975
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Entry
CFK40_07975 CDS
T04976
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFK40_07975 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_07975 (ligD)
Enzymes [BR:
vne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFK40_07975 (ligD)
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFK40_07975 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ASN04953
UniProt:
A0A221MBD4
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All DBs
Position
1710972..1712789
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AA seq
605 aa
AA seq
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MKLMHPIARAQIPTEPGWVYEVKYDGFRCILHWEKGNIKLVSRNDIDLTDKFPEIIAFCL
ANQDVLSKLLPLKIDGELVIINNAFQANFSAIQKRGRLTKKETINKASEARPATFLAFDL
LEQKGSPLIKKTHMERKKLLLAFFKLAKINCTITRLNRLSFVPSYENERDLWGYVFDHKA
EGIIAKRKKSFYGSGKHHNDWFKIKNWRTLDGILTSLDTKNDYFTVKVNEGDHLVEVGKC
KHGVDSSELTTLRELFVSKGTKKGSEHVLPPAICAEINTLDFVKNELREPSIKKLLVNNS
AADCTRAKMQIDMAMIPASIEPSNTNKIFWPAKGQTKGDLLIYLREISPYMLPMLRDRIL
TVIRSPDGVREQFFFQKHLPDYAPSFIKSLPIDDEIFFICDQLESLLWFANHGAIEYHTP
FQTVGDPNPIEIVFDLDPPDRSRFPLAIQAANILKQLLDDLSLVSFVKTSGSKGIQVHIP
IPKNSLTYDETGIFTEAIAMTIEKEYPKLFTTERLKKNRSGRMYIDYIQHGKDKTIITAY
SPRKTEDATVATPLYWEEVGEGLTPEMFTINNVVERVQMLGCPFTGYADIGETQKMENVR
SLLEK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaatgcatccgatcgcacgcgcacaaatacctactgaacctggttgggtttat
gaagtaaagtatgacgggtttcgttgtattttgcattgggagaaaggtaatataaagcta
gtaagtagaaatgatatagatttaacagataagtttcctgagattatcgcgttttgtttg
gcgaaccaagacgtactatctaaactcctgccattaaaaattgatggtgagctggtaatt
attaataatgcgtttcaggcaaacttttccgcaatccaaaagcgagggcgtttaacgaag
aaagaaaccattaataaggcatctgaagcgagaccagcaacatttcttgcatttgattta
ttagaacagaaaggttcaccattgatcaagaaaacacatatggaacggaaaaaactgctt
cttgcattttttaaattagccaaaattaattgtactattacacggttgaatcgattaagt
tttgttccatcttatgaaaatgaaagggatttatggggatacgtttttgatcataaagct
gaaggaataatagctaaacgaaaaaaaagtttctatggttctggcaagcatcataatgac
tggtttaaaataaaaaactggcggacgcttgacgggattcttacctctttagataccaaa
aatgattattttactgtgaaagttaatgaaggggatcatctagttgaggtcggaaaatgc
aaacatggggttgatagtagcgaacttactacattacgtgaactatttgtttccaaagga
actaaaaaagggagtgaacatgtacttccacctgcgatttgtgctgaaataaatacactt
gattttgttaagaatgagctccgggagccatcgattaaaaagctattagtaaataactct
gcagcagattgtacgcgtgctaaaatgcaaatagatatggcaatgattccagcaagtatc
gaacctagcaatacaaataaaattttttggcccgccaaaggacaaactaaaggagattta
cttatctatttacgtgagatatcaccgtatatgcttcctatgttgcgtgatcggatatta
actgtcattcgatctcctgatggggtgagggagcaattcttttttcaaaaacatcttcca
gactatgcaccgtcatttataaaaagtttaccaattgatgatgaaatttttttcatttgt
gatcaattggaatcgcttctatggttcgcaaatcatggtgcaatcgaatatcatacacca
tttcaaacagttggtgatccaaatcctattgaaattgtatttgatttagatccacctgat
cgcagccgatttccgcttgccattcaagcagcaaacatactcaaacaattacttgatgat
ttaagtctggtttcctttgtaaaaacatctgggagtaaaggaatacaagttcacattccg
attccgaaaaatagtttaacgtatgatgagacaggaatctttaccgaggccattgcaatg
accattgaaaaagaatacccgaaactgttcacaacagaaagattaaagaaaaatcggagt
ggacggatgtatatcgattatattcagcatggcaaggataaaacaatcattactgcctat
tcaccaagaaaaacagaggatgctacggttgcgacaccattgtattgggaggaagtggga
gagggtctaacgccagagatgtttaccattaataatgttgtagaacgtgtacaaatgctt
gggtgtccatttactggatacgctgacataggtgagactcagaagatggaaaatgtacgg
agcttattggaaaaataa
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