Vibrio neocaledonicus: D3H41_16180
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Entry
D3H41_16180 CDS
T06228
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl00300
Lysine biosynthesis
vnl00470
D-Amino acid metabolism
vnl01100
Metabolic pathways
vnl01110
Biosynthesis of secondary metabolites
vnl01120
Microbial metabolism in diverse environments
vnl01230
Biosynthesis of amino acids
Module
vnl_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
D3H41_16180 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
D3H41_16180 (lysA)
Enzymes [BR:
vnl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
D3H41_16180 (lysA)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QCO87457
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All DBs
Position
1:complement(3265645..3266898)
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AA seq
417 aa
AA seq
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MDYFNYQDDGQLWAEDVPLQALAEQYGTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAV
KANSNLGVLNTLARLGSGFDIVSGGELERVIAAGGDPKKVVFSGVGKTPAEMKRALELGI
KCFNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAP
DVYKFAQSLPNLNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVGGG
LGVVYRDELPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEHK
NFAIIDAAMNDLMRPALYQAWQDIVPVSPRKGEAQTYDLVGPICETGDFLGKDRALVLQE
GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMVDGKQSHLVRQREELTSLWQLEQILPE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttggattacttcaactatcaggatgatggccagctttgggccgaagacgtcccacttcaa
gctcttgcagagcaatatggcactcctctttacgtatattctcgagccacgctagagcgc
cattggaaagcgtttgatagtgctgtgggtcagcatcctcacctggtttgctacgcggtg
aaagccaactcaaacttaggcgtattgaacacgctagcgcgtttgggatcgggttttgac
atcgtgtcgggtggtgaacttgagcgtgtgattgccgcaggcggtgatccgaaaaaagtc
gttttctctggtgttggtaaaacaccggcagagatgaagcgcgctcttgagctaggtatc
aaatgtttcaacgttgaatctgagccagagctagaacgtttgaacaaggttgcgggtgag
cttggtgtgattgcgccaatttctcttcgtatcaatccagatgtcgacgcgaaaacacac
ccttacatttcgactggtcttcgcgacaataaattcggcattgcgtttgatcgtgcgcca
gatgtttataaattcgcgcaaagcctgccgaacttgaatgtgcaaggcatcgactgccac
attggttctcagctgaccaatatagacccatttatcgacgcgacagaccgtttattagcc
ctgattgatgatttaaaagcgcaaggcattaacattcgtcaccttgatgtcggcggtggt
ttgggtgtggtctatcgtgatgaattaccacctcagccttctgattacgccaaagcgtta
ctaggacgtcttgaaaatcaccaagacttggagctgatctttgagccaggccgtgcaatt
gctgcgaacgcaggtatcttgctaacgcgtgttgagtttttaaaacatactgagcataaa
aactttgcgattatcgacgctgcaatgaacgacttgatgcgtcctgcgctataccaagca
tggcaagatattgtgccagtttcaccgcgaaagggtgaagctcagacttacgacttggtt
ggtcctatttgtgaaaccggcgacttcttgggtaaagatcgcgcactcgttttgcaagaa
ggtgatctactcgcggttcgttcagcaggtgcctatggttttgtgatgtcttcgaactac
aatactcgtacccgagcggcagaagtgatggtggacggtaaacaaagccacttagttcgc
cagcgtgaggagctgaccagtttgtggcagctggaacagattctaccggagtaa
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