Vibrio parahaemolyticus RIMD 2210633: VP1944
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Entry
VP1944 CDS
T00120
Name
(GenBank) excinuclease ABC, subunit C
KO
K03703
excinuclease ABC subunit C
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VP1944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP1944
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VP1944
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
HHH_5
UVR
HHH
HHH_2
HHH_3
DUF1569
GIY_YIG_domain
GIY_YIG_2
DUF1890
Motif
Other DBs
NCBI-ProteinID:
BAC60207
UniProt:
Q87NC4
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All DBs
Position
1:complement(2035634..2037466)
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AA seq
610 aa
AA seq
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MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALV
SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYILISGHKHPRLSMHRG
AKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVS
SIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSF
LTQYYLSHNEARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLS
NTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECFDISHTMGESTIASCVVFNNE
GPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNH
AIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSL
AEIIFQALKQ
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctcctttcgattcggcttcctttctcaagacagtaactcatcagcccggcgtg
taccgcatgtacaacgccgatgctgttgttatttacgtcggtaaagccaaagatcttcaa
aaacgcctttctagttactttcgcaaaaaagtcgacagtgaaaaaacacgcgctttggtg
agcaatattgccaaaatagatgtcacggtgacgcataccgagacagaagcgctgattctt
gaacacaattacatcaagcagtatttaccgaaatacaacgtgcttctgcgtgatgataaa
tcgtacccttatatattaattagcggtcataaacatccgagattgtcgatgcatcgtggg
gccaagaagcgcaaaggcgagtattttggtccttaccctgactctggggcggtacgagaa
acgctgcacttgctgcaaaaaatatttcctgttagacagtgtgaagatacggtttactcc
aatcgaacgcgcccttgcttgatgtatcaaattggtcgttgcgctggcccgtgtgtgagc
tcgattatctcagatgaagagtatgcagagctggtgggtttcgtccgtctatttctgcaa
ggtaaagatcagcaagtactgaagcagttgatagagaaaatggaggttgcaagtcagcaa
cttcggtttgaagacgcggcaaagtttcgtgatcagatacaagcgataagacgagtccaa
gaacagcaatatgtatcggaagacagcatggatgatatggatgtgctgggttttgcgcaa
gagaacggcattgcttgcatccacatattgatgattcgtcagggtaaagtgttaggcagt
cgcagtcatttccctaagattcctcaaaacacgagccaacaagaggtattcgatagcttt
ttgactcagtactacctgagccacaatgaggcgcgaacaatcccatctcgaataatactg
aaccaagagttggccgacgatctcgaacccattcaaaaagcactgagtgaagtcgcaggg
cgtaaggttcatttccatacttctccgactggtgcgagagggagatatcttaagctgtct
aataccaatgcacttactgccatcacgacaaaaatcaaccataagatgacgatcaaccaa
cgtttcaaagcacttcgcgagacgctgggaatggagtctattatgaggatggagtgtttt
gatatttcccatacgatgggcgagagcactatcgcatcatgtgtggtcttcaacaacgaa
ggtccggtaaagcaagaataccgacgctataacattactggaatcacgggtggcgatgat
tatgcagcgatggggcaggcgttagagcggcgctactcaaagcagttggacgtagaaaaa
atccctgacatcatctttattgatggtggtaaaggtcagttaaatcgtgcacatgaaatc
atcgcccagtattggggagattggcctaagcgaccaatcatgattggtattgccaaaggt
gtaacacgtaaacctggccttgaaaccttaattacggttgatggcgaagagttcaactta
cctagtgacgctccagcgctacacttgattcaacatattcgcgatgagagtcataatcat
gcgattgcgggtcacagagcgaaacgtggtaaaactcgacgtacaagcgcgttggagggg
attgaaggtgttgggccaaaacgacgccaagctttattgaaatacatgggtggattgcag
gaacttaagcgtgcaagtgttgaagaaatcgccaaagtaccgggaattagtcactcttta
gcagaaattattttccaagcattgaaacaataa
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