Vibrio parahaemolyticus RIMD 2210633: VP2452
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Entry
VP2452 CDS
T00120
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VP2452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VP2452
03016 Transfer RNA biogenesis [BR:
vpa03016
]
VP2452
Enzymes [BR:
vpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VP2452
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VP2452
Transfer RNA biogenesis [BR:
vpa03016
]
Prokaryotic type
tRNA degradation factors
VP2452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
DUF3016
SLS1_KH2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
BAC60715
UniProt:
Q87M06
LinkDB
All DBs
Position
1:complement(2573146..2575281)
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAAEAPAAKEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacggttactctagaa
actggcgttatcgcacgtcaagctacagcagcagttatggttacaatggacgatacagca
gtattcgtttcagttgttggtaaaaaagaagcagtagcgggtcaagatttcttcccacta
actgtaaactaccaagagcgtacttacgctgcaggtaaaatcccaggtggcttcttcaaa
cgtgaaggtcgtccatctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgtccactattcccggacgcgttcaaaaatgaagtgcaagttattgcaacggttgtatct
gtaaacccagacgttcaaccagatatcccaacaatgattggtacatctgcggctcttgct
atctctggtattccattcaatggtcctatcggtgcagcacgtgttggtcacatcgatggt
cagctagttcttaaccctagccaaactgagctaaacgcatcgcgtctagatctagtggtt
gcaggtacagagtctgcggtactaatggttgagtcagaagctgacaacctaactgaagaa
gaaatgctagcagcagttgtgttcggtcacgatcaacaacaagttgtaatcaatgctatc
aacgagttcaaagccgaagttgctactccagcttgggattgggttgctccagaagaaaat
acagcacttaagactaagattgctgaacttgctgaagctaagcttgttgaggcttaccaa
atcactgagaaaatggctcgttacgaccgcatccatgagattgcagcagaagtaaacgaa
gcactgcttgctcaagatcctgaagcggatactaaagaaatccacacaatcttccacgat
ctagagaagactgttgtgcgtcgtagcatcatcgcgggtaaccctcgtatcgatggtcgt
gagaaagacatggttcgtgcgctagacgtacgcactggtgttcttccacgtacacacggc
tctgcactgttcactcgtggtgaaactcaggccctagttactgcgactctaggtactcaa
cgtgatgcacaaatcatcgatgagctaactggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtgggtgagactggtttcgtaggttctcctaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtattgcagctgtaatgccatctgttgac
gagttcccatacacagttcgcgttgtatcagaaatcacggaatctaacggttcatcttca
atggcttctgtatgtggtacatctctagcacttatggatgctggtgtgccaatcaaagca
tctgttgcgggtatcgcgatgggtcttgtgaaagaaggcgatgactttgttgttctttct
gacatccttggcgacgaagaccacctaggtgacatggactttaaagtagcaggtactagc
actggtgttactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagcacaaggcgcacgtaagcacatcctatctgtaatggatgaa
gcgcttgctggtgctcgtgacgatatctctgagttcgctccacgtatccacacaatgaag
atcagcgcagagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactattgaaatcgaagacgacggtacaatcaagattgcagca
actgaaggtgcagcagcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtaggccgtatctacactggtaaagtggctcgtctagctgactttggtgcgtttgta
acggttctaccaggtaaagatggtctagtacacatttctcaaatcgctgaaaaacgcgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcaagttaaagttcttgaaatc
gaccgtcaaggccgtgtacgtctaagcatgaaagaagcggtagagaagcctgctgaagaa
gcagcggcagaagcaccagcagcgaaagaagagtaa
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