KEGG   Variovorax paradoxus B4: VAPA_1c25980
Entry
VAPA_1c25980      CDS       T02835                                 
Name
(GenBank) putative transcriptional regulator
  KO
K15773  HTH-type transcriptional regulator / antitoxin HipB
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vpd03000]
    VAPA_1c25980
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vpd02048]
    VAPA_1c25980
Transcription factors [BR:vpd03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    VAPA_1c25980
Prokaryotic defense system [BR:vpd02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   HipA-HipB
    VAPA_1c25980
SSDB
Motif
Pfam: dnstrm_HI1420 HTH_3 HTH_31 Sigma70_r4_2 HTH_37 HTH_23
Other DBs
NCBI-ProteinID: AGU49696
UniProt: T1XB41
LinkDB
Position
1:complement(2749704..2750033)
AA seq 109 aa
MTKQELVTALTARRDATGLTHADIALRSGLTERSVRNALSLKGNPQMSSLLALVDALGLE
LQLAPKGFGERTDADPGYRPVPTRIGDAVGGAAAPSASASEPRSRKRSP
NT seq 330 nt   +upstreamnt  +downstreamnt
gtgaccaagcaagaactcgtcaccgccctgacggcccggcgcgatgccacgggcctcacc
catgcggacattgcgctgcgctccggcctgaccgagcgctcggtacgcaatgcgctgagc
ctgaaggggaatccgcagatgtcctccctgctggcgctggtggatgccctgggcctcgaa
ctgcagctcgcgcccaagggcttcggcgaacgcacggatgcggatcccggctatcgcccg
gttcccacgcgcatcggcgatgccgtcggcggtgcggctgcgccgtcggcatcggcttcc
gagccccgttcgaggaagcgttcgccatga

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