Variovorax paradoxus B4: VAPA_1c30970
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Entry
VAPA_1c30970 CDS
T02835
Symbol
cbxS
Name
(GenBank) ribulose bisphosphate carboxylase, small chain CbxS
KO
K01602
ribulose-bisphosphate carboxylase small chain [EC:
4.1.1.39
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00630
Glyoxylate and dicarboxylate metabolism
vpd00710
Carbon fixation in photosynthetic organisms
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
Module
vpd_M00165
Reductive pentose phosphate cycle (Calvin cycle)
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VAPA_1c30970 (cbxS)
09102 Energy metabolism
00710 Carbon fixation in photosynthetic organisms
VAPA_1c30970 (cbxS)
Enzymes [BR:
vpd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.39 ribulose-bisphosphate carboxylase
VAPA_1c30970 (cbxS)
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Gene cluster
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Motif
Pfam:
RuBisCO_small
DUF772
Motif
Other DBs
NCBI-ProteinID:
AGU50186
UniProt:
T1XCI1
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All DBs
Position
1:complement(3268933..3269352)
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AA seq
139 aa
AA seq
DB search
MRITQGTFSFLPDLSDEQISRQVEYCLDKGWAIGLEYTDDPHPRNTFWEMFGNPMFDIKD
AAGVMLELAACRKTFPQQYIRVTAFDSTHGTESVVMSFIVNRPSNEPGFRLIRSEEPGRT
IRYSLESYAVQARPEGSRY
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcacacaaggcactttttccttcctgcccgacctgagcgacgagcagatcagc
cgccaggtcgagtattgcctcgacaagggctgggccatcgggctcgaatacaccgacgac
ccgcatccgcgcaacaccttctgggagatgttcggcaacccgatgttcgacatcaaggac
gcggccggcgtcatgctcgaactcgcggcctgccgcaagacttttccgcagcagtacatc
cgcgtgacggccttcgattcgacgcacggcaccgagtcggtcgtgatgtccttcatcgtc
aaccggccctcgaacgaaccgggcttccgcctgatccgctccgaggagccgggccgcacg
atccgctacagcctcgaaagctatgcggtgcaggcgcggcccgaaggcagccggtactga
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