Variovorax paradoxus EPS: Varpa_1936
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Entry
Varpa_1936 CDS
T01392
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Varpa_1936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_1936
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Varpa_1936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
ADU36146
UniProt:
E6V8S4
LinkDB
All DBs
Position
complement(2132488..2134824)
Genome browser
AA seq
778 aa
AA seq
DB search
MPSSKKPAISLAKSVAKKPVAEKPLKAGTTSASKTGAAASKSASATKVKTVPTKTTTLDD
PKKVAAPAAKKVGRPPKAAGAAAPATGAKRGRKPKAGNDAPESDVDLSDIEEDLAGDEPA
VATTTEEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLAKRRSRLKTLITLGKTRGYL
THGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETLLLNNTAPTATTVEEAEE
EAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASP
ATIAEILRLANEIREGKVVISTIVDGFSNPNEADDYVAEEDFDEFDEEDDDDGKGGSKAL
TKKLEELKRDALERFDRIAGMFEKVHKIYDKEGYGTPAYVKAQEALSEELMTIRFTAKTI
EKLCDLVRTQVDDVRKKERELRRIIVDKCGFPQDEFIRDFSGYDKNGNRIASNLLNLKWV
EKQAAAGKPWSAVLARNIPPVQELQQRLADIQSRVVVPLTQLKDINKRMNEGESSSRDAK
KEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
QAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRK
IMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPREA
KVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDTL
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcccagttcaaagaagcctgctatttcactcgccaaaagcgtcgccaaaaagcctgta
gcagagaaaccgttgaaagccggcactacgtcggcatctaagacgggtgccgccgcgtcc
aaatcggcatccgcaacgaaagtgaaaaccgtgcccacgaaaacgaccaccctcgacgat
cccaagaaagtcgccgctcccgccgccaaaaaagtcgggcgcccccccaaggctgccggt
gccgccgcacctgccaccggcgccaagcgcggccgcaagcccaaggccggcaatgacgcg
cccgagagcgacgtcgacctgtcggacatcgaggaagacctggccggcgacgagccggcg
gttgccacgaccactgaagaaaaggtcaagccgctgcgcatgaagatcagcaaggcgaag
gaacgcgccttgatgaaggagttcggcctcgacgagaccgtgctctccgaagaagacctg
gccaagcgccgctcgcgcctgaagaccctgatcacgctgggcaagacccgcggctacctc
acgcacggcgaaatctccgaccacttgcccgacaagctggtagacgccgagaccatggaa
gtcgtggtcaccatgctcaacgacatgggcgtggcggtgtacgagcaaacgcccgacgcc
gaaaccctgctgctgaacaacaccgcgcccaccgccaccacggtggaagaagccgaggaa
gaagccgaagcggccctgtccacggtggacagcgaattcggccgcaccaccgacccggtc
cgcatgtacatgcgcgaaatgggcacggtcgagctgctgacgcgcgaaggcgaaatcgaa
atcgccaagcgcatcgaaggcggcctgatggccatgatggaagccatctcggcctccccc
gccaccatcgccgagatcctgcgcctggccaatgaaatccgcgaaggcaaggtcgtcatc
tcgaccatcgtggacggcttctcgaaccccaacgaggccgacgactacgtggccgaagaa
gacttcgacgaattcgacgaagaagacgacgacgacggcaagggcggctccaaggccctc
accaagaagctcgaagaactcaagcgcgacgcgctcgagcgcttcgaccgcatcgccggc
atgttcgagaaggtccacaagatctacgacaaggaaggctacggcacgcccgcgtacgtc
aaggcccaggaggccctgtccgaagagctgatgaccatccgcttcacggccaagaccatc
gagaagctgtgcgacctggtgcgcacgcaggtggacgacgttcgcaagaaagaacgcgaa
ctgcgccgcatcatcgtggacaagtgcggcttcccgcaggacgagttcatccgcgacttc
agcggctacgacaagaacggcaatcgcatcgcgtcgaacctcttgaacctcaagtgggtc
gagaagcaggccgccgccggcaagccctggagtgccgtgctcgcgcgcaacattccgccg
gtgcaggaactgcagcagcgcctggccgacatccagtcgcgagtggtggtgccgctcacg
cagctcaaggacatcaacaagcgcatgaacgaaggcgaatcgtcttcgcgcgatgccaag
aaggaaatgatcgaggccaacctgcgcctcgtgatctccatcgccaagaagtacaccaac
cgcggcctgcagttcctcgacttgatccaggaaggcaacatcggcctcatgaaggcggtc
gacaagttcgaataccgtcgcggctacaaattctcgacgtacgccacgtggtggatccgc
caggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatg
atcgagacgatcaacaagatgaaccgcatctcgcgccagcacttgcaggagttcggcttc
gagcccgacgccggcatcctggccgccaagatggagatcccggaagacaagatccgcaag
atcatgaagatcgcgaaagagccgatctcgatggaaacccccatcggcgacgacgacgat
tcgcacctgggcgacttcatcgaggacagcagcaacacggcgcccatcgaagccgcaatg
caggcgggcctccgcgacgtggtcaaggacatcctcgactcgctgacgccgcgcgaagcc
aaggtgctgcgcatgcgcttcggcatcgagatgtcgaccgaccacacgctggaagaagtc
ggcaagcagttcgacgtgacccgcgagcgcatccgccagatcgaagccaaggcgctgcgc
aagctcaagcacccgtcgcgttcggacaagctgcgcagcttcatcgatacgctctga
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