Virgibacillus dokdonensis: A21D_02243
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Entry
A21D_02243 CDS
T05261
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn03030
DNA replication
vpn03410
Base excision repair
vpn03420
Nucleotide excision repair
vpn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A21D_02243 (ligA)
03410 Base excision repair
A21D_02243 (ligA)
03420 Nucleotide excision repair
A21D_02243 (ligA)
03430 Mismatch repair
A21D_02243 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpn03032
]
A21D_02243 (ligA)
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_02243 (ligA)
Enzymes [BR:
vpn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A21D_02243 (ligA)
DNA replication proteins [BR:
vpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A21D_02243 (ligA)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A21D_02243 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A21D_02243 (ligA)
MMR (mismatch excision repair)
DNA ligase
A21D_02243 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A21D_02243 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
PTCB-BRCT
HHH_3
zf-NADH-PPase
RNA_ligase
5_3_exonuc
Integrase_DNA
BRCT_2
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
AUJ25307
UniProt:
A0A2K9J023
LinkDB
All DBs
Position
2396361..2398379
Genome browser
AA seq
672 aa
AA seq
DB search
MDKQQAQEKIKQLTTLLNQYNYEYHVLDKPSVEDAVYDQKMRELRELEEAYPEFQEPDSP
TQRVGGEPLEEFHKVEHRIPMLSLANAFNEQDIRDFVKRASQGMEEPISFVCELKIDGLA
VSLTYEDGKFVRGATRGDGTIGEDITSNLRTIRSIPLTIRENETLEIRGEAFMPHKSFLA
LNKEREAKGEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWDNSNVTKHSERLE
RLKELGLKVNPEWRKCDSVEEVMAYVQYWTTERPHLDYEIDGIVIKVDDINQQEKLGYTA
KSPRWAIAYKFPAEEAVTKLTDIELSVGRTGVVTPTAILNPVKVAGTTVQRASLHNEDLI
REQDIRIGDTVVVKKAGDIIPKVVRAVVEERTGEEQEFHMPEECPACGSELVRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVIVQLFQADLVKTIADIYRLERTELLKL
ERMGEKSVTNLLEAIEASKANSLEKLLFGLGIRFVGAKAAKTLAMEFETMEKLQQATYDD
LVAINEIGEKMADSIVQYFQEQQVMDLLEELRSLGVNMSYLGVKPTETAQTSAFSGKTVV
LTGKMEIYTRTEAKQFIEDLGGNVTGSVSKKTDLVIAGVDAGSKLAKAEKLGVEVWDESQ
FEQVMKNEGVGS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacaacaagcacaagagaaaataaaacagcttacgacgcttttaaatcaatat
aattatgagtatcatgtgctcgataagccatctgtggaagatgcggtttatgaccaaaaa
atgcgcgagcttcgtgagctagaagaagcgtatccagagtttcaagagccagattctcct
acacagcgtgttggtggagagccgctggaagaatttcataaagtggagcaccgtattcct
atgcttagcttggcaaatgcttttaatgaacaagatattcgcgattttgttaaaagggcg
agtcaaggaatggaagagccaataagcttcgtttgtgagttaaaaattgatggattagca
gtttctttaacatacgaagatggcaagtttgttcgtggagcaacacgtggtgacggaacg
ataggtgaagatattacaagtaatttacgaacaatccgtagcattccattaacaattaga
gaaaatgaaacattggaaatacgtggagaagcgtttatgccacataaatcctttttagct
ttaaacaaagaacgagaagcaaaaggggaagaaccatttgccaatccgcggaacgcagcg
gctggttctttacgccagcttgatccgaaaattgccgcgaaacgaaacctcgacattttt
ttgtatggggttggcgaatgggataatagcaatgtaacgaaacatagtgaacggttagaa
cggttaaaagaattaggtttaaaggttaacccagaatggagaaaatgtgactccgtagaa
gaagtgatggcgtatgtgcaatattggacgacagaacgaccacacctagattatgaaatt
gatgggattgttattaaagtagatgacattaaccagcaagaaaaattaggttatactgca
aaaagtccacgttgggcaattgcttataagtttccggctgaggaagccgtaacgaaactg
acagatattgaattaagcgttggtaggacaggtgtagttacaccgacagcgattttaaat
ccagtaaaagttgctggcacaactgttcaacgtgcttctcttcataatgaagatttaata
cgggaacaggatattcgcattggcgacacggtcgtggttaaaaaagcgggagatattatt
cctaaagtagttcgagctgtggtagaagaacgaacaggggaagagcaagaatttcatatg
ccggaggagtgtcctgcatgtggcagtgaattagtccgtttagaggaagaggttgcttta
cgttgtattaacccaaattgccctgcgcaactaaaagaagggcttatccattttgtatct
aggaatgctatgaatattgatggccttggagaaaaggtaatcgttcagctattccaagct
gatttggtgaaaacaattgctgatatttaccgtctggaaagaacagaacttttaaaactg
gaacggatgggagaaaaatcagttaccaatttattagaagcgattgaagcttcaaaagca
aattcactggaaaaattattatttggtcttggcattcgttttgttggagcaaaggctgcc
aaaacattagcgatggaatttgaaacgatggaaaagctgcaacaagcaacgtatgatgat
ttagtagcaattaatgaaattggcgaaaaaatggctgactctatcgtacaatattttcaa
gaacaacaagtgatggatcttttagaagaattgcgtagccttggtgttaatatgtcttat
ttaggcgtaaaacctacagaaacagctcaaacaagtgcatttagcgggaaaacggttgtg
ttaacaggaaaaatggaaatatatacacgcaccgaagcaaaacaattcattgaagactta
ggtgggaatgtaactgggagcgtcagtaaaaagacagatttagtcattgctggtgtagat
gcaggttccaagttagcaaaagcagaaaaacttggggttgaagtttgggatgaatctcaa
tttgagcaggtcatgaaaaacgagggagtgggatcgtga
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