Vibrio qinghaiensis: CCZ37_02445
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Entry
CCZ37_02445 CDS
T05259
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vqi
Vibrio qinghaiensis
Pathway
vqi03410
Base excision repair
vqi03430
Mismatch repair
vqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CCZ37_02445 (recJ)
03430 Mismatch repair
CCZ37_02445 (recJ)
03440 Homologous recombination
CCZ37_02445 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vqi03400
]
CCZ37_02445 (recJ)
DNA repair and recombination proteins [BR:
vqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CCZ37_02445 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CCZ37_02445 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCZ37_02445 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ASU21519
UniProt:
A0A223MVD8
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All DBs
Position
1:481992..483731
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AA seq
579 aa
AA seq
DB search
MIEIKQRPAPDLSQLPDTIPTLLKRIYINRGITNLEQLDKAAKALHSYQQLGGIERAVQL
LFHAIEQQQRIIVVGDFDADGATSCALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVD
QAIELGAQMIMTVDNGVSSIDGVRYAKQQGLTVLVTDHHLPGHELPEVDAMVNPNLANCP
FPSKALAGVGVAFYLMMALCVHMRKNGWFTRQGMSEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGHARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNDIHAARRMASELDGLNQTRKEIEEGMKQEALAFCERLQLSENSELPHGLVLFQ
RDWHQGVIGILASRIKDKYHRPVIAFADGGDGSIKGSCRSVAGLHMRDVLDRIDTQNPGL
IAKFGGHAMAAGLTIAEKEFERFAELFDQAVRRELDESALKGVILSDGELTPEEFSMHTA
ETLRSGGPWGQAFPEPLFDGEFKLLHQKLVGEKHLKLMLEPLFKGHPTNIMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgagataaaacaaagaccagcccccgatctttcgcaacttcctgacacgattcca
acactgcttaaacgtatctatatcaaccgtggtatcacgaaccttgaacaactcgacaag
gccgctaaagcactgcattcctaccaacaattaggtggtatagaacgagcggtacaacta
ctttttcacgccatcgagcagcagcagcgcatcatagtcgtcggggattttgatgctgat
ggtgcaaccagttgcgccttatctgttttggcgttgcgaatgttgggatcgcacaatgtg
gactatctcgtgcctaaccgttttgaagatggttatggcttaagccctgaagtggtcgat
caagcgattgagcttggcgcgcagatgatcatgacggtcgataacggcgtctcctctatc
gacggggtgcgttatgccaagcagcaaggactgaccgtcttggtgacggatcaccattta
ccgggacacgagttgccagaggttgatgcgatggtcaatcccaatttggctaactgcccg
tttccctcgaaggcattagccggcgtaggggtggctttctatttgatgatggcgctgtgc
gtgcatatgcgaaaaaacggctggtttactcgacaaggcatgagtgaacctaagttgatg
gagctgattgacttagtcgcactgggtactgtcgctgatgttgtgccgctcgatgaaaac
aaccgcattttagtgcatcaaggtttgcaacgcattcgcgccgggcatgcaaggccgggt
attcaagctttgattgaggttgctaaacgtgacgcgaggcgtttagttgcctcggatttt
ggctttgcgttagggccacgcatcaatgcggcagggcgcttggatgatatgtcatttggc
gttgagctgttaatgtgcaatgacattcacgctgcgcgtagaatggccagtgagctggat
ggccttaaccaaactcgtaaagagattgaagaggggatgaagcaagaggcgctggctttt
tgtgagcgcttacaactgagtgaaaatagcgaattgccgcacggtttagtgctgtttcaa
cgcgattggcaccaaggtgtgattggtattttagcctcacgtattaaagataaatatcat
cgccctgtgattgcgtttgccgatggtggcgatggcagtattaaagggtcatgccgctct
gttgctgggttacacatgcgcgatgtgctggatcgcattgatacacaaaaccccggttta
atcgccaaatttggcggtcacgcgatggcggcaggtttaactattgccgaaaaagagttt
gagcgttttgctgagctgtttgatcaagctgtacgtcgcgagttagatgaaagcgcgctc
aagggcgtgattttatccgacggggagttaacacctgaagagttctcgatgcataccgca
gaaaccttgcgttccggcggcccatgggggcaggcgtttcctgaacctctctttgacggt
gagttcaaactattgcaccaaaagctggtgggagaaaagcatttgaaactgatgcttgag
ccgttattcaaaggccacccaaccaacattatgatcgatggtatcgcttttaatgtcgat
ttaagacgctggccagatgcgtcggtgaaaacggtgcgtcttgcgtataagcttgatatt
aatgagtttcgcggcaatcagtcactgcaattgatgattgatcacctcgaagcgaagtaa
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