Vitis riparia (riverbank grape): 117930410
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Entry
117930410 CDS
T07274
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
vri
Vitis riparia (riverbank grape)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
RMMBL
Motif
Other DBs
NCBI-GeneID:
117930410
NCBI-ProteinID:
XP_034706946
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Position
14:complement(11255363..11313640)
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AA seq
1419 aa
AA seq
DB search
MAAPQSSSSETMTLDSTHLFLNSHKLLSQHQSPQPPPPPPPSLSFLSNHSPLPPIPTNFP
QSKLIPKSRFVVDGFRCSGDYSVTYFLSHFHSDHYSGLSPKWSNGIIFCSNTTARLLVEV
LGVSSLFVYPLAVSQPVLIDGCEVALLDANHCPGAVQFLFKVPGVDGRFERYVHTGDFRF
CESMKLEPCLGEFVGSEAVFLDTTYCNPKFVFPSQDESVDYIVEAIERIGLENKGLMKSV
LFLVATYVIGKERILLEISRRRNCKIHVDGRKMSVLRVLGYEDGGVFTEDESKSDVHVVG
WNVLGETWPYFRPNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRNKFAMRTKDSFEIHLV
PYSEHSNYDELREYVKFLRPKRVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFL
KGFQRGCLEADENVENNTRTVLNKELDAEKHVTFSKRKTKESTESGFLAVSSSSMQEPGS
QDSTLLNDKGSEEVIQELRDCLPIWVTQNQMLDLLSCSDGNVIEAVSNFYERETEFREQV
IGHTNSVCTSQTSSLNDSVSLSKLGSVGSSPQKMEDIHGSQSYSLLNIRSSMKSSSLSSG
KRKKNLDKKSIKKGKVGSKPESGGSKQSTITRFFSKIVSNDSQSGDGMSEQLSDDENSFP
SEVITSYEEQVEQFIKIVNVDESSRYYVSSILKKTKGDINMALDIYYSKPEGNLGENEER
LVVSSKSIQPECCIQSCSSELEKKVSEKESGNIVEAKGLSRETIAATLVSLPPEKYSPIE
HACWKLGQPAPYLHLARTFDLVEGEKGKIKAASMLCNMFRSLLALSPEDVIPAVYLCTNK
IAADHENMELNIGGSIVTSAMEEACGTSRSKIRAMYNSLGDLGDVAQVCRQTQSFLAPPS
PLLIKDVFSMLRNISVQTGSGSIVRKKSLILNLMRSCREKEIKFLVRTLVRNLRIGAMMR
TVLPALAQAVVLHSSPNFYHKGTTENIKEKLQCLSAAVVEAYNILPNLDLLIPSLLDKGI
GFSSSSLSMVPGIPIKPMLAKITNGVPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVR
IFSRNGDETTSRFPDLVSVVRESCKPDALTFILDAEVVAIDRKNGSKLMSFQELSSRERG
SKDSLITLDSIKVDICVFVFDIMFANGKQLLDIPLRQRRKYLKDLFNDQKLGYFEYAEET
TVEADDASTNEATLTKINLFLEEAFRSSCEGIMIKSLDIDAGYSPSKRTDTWLKVKRDYV
EGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDNFYKEMKE
FFNEDKILSKKPPYYQTAELPDMWFTPELIWEIRGADFTVSPVHQAAIGLVHPSRGISVR
FPRFIRPIMDRRPEECSTAADIADMFHSQTRKMDVTHHN
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccccaatcttcctcctccgaaaccatgacgttagattccactcaccttttt
ctcaactcccacaaattactctctcaacaccaatctccccaaccccctccacctccacct
ccctccctctcttttctctccaatcactcccctctccccccaatccccaccaattttcct
cagtccaagctcattcccaaatcccggttcgttgtcgatgggtttcggtgctccggcgac
tactccgtcacctacttcctctctcacttccactccgatcactattccgggctcagccct
aagtggtccaatggtattatattctgttcaaatacaactgcacgccttctcgttgaagtg
cttggagtctcttctttgtttgtttatcctttggcggtgtcccaacccgttttgattgat
ggatgtgaagtggcgcttctcgatgcaaatcactgccccggagcggtgcaatttttgttc
aaggttcctggtgtagatggtaggtttgaaaggtatgttcatactggtgattttaggttt
tgtgaatcgatgaaattggagccttgtttgggtgaatttgttggttctgaagcggttttt
ttggatacgacctattgtaatccaaagtttgtatttccgtctcaagatgaatctgttgat
tatatagttgaggcgatagagagaattggccttgagaacaagggtttgatgaagtctgtt
ttgtttcttgtagctacttatgttattggaaaagagaggatattgcttgaaatatcaaga
aggcgtaactgtaaaatacatgtagatggtagaaaaatgtcggtgttgcgagttttaggg
tatgaggatggtggggtatttacagaggatgaatctaagagtgatgttcatgtcgttgga
tggaatgtgttgggtgagacttggccttattttagacccaattttgtgaagatgaaggag
attatgattgaaagagggtactcaaaagttgtgggctttgttcctacggggtggacgtat
gaagtaaagcgcaacaagtttgccatgaggactaaggattcatttgagatccatcttgta
ccatacagtgaacattcaaactatgatgagctcagagaatatgttaaatttttgagacca
aagcgtgttattcctacagtaggattggacattgagaaacttgacagtaaacatgctaat
gccatgagaaagcattttgctggtttggttgatgaaatggccatcaagcatgaattcttg
aagggttttcaacgcgggtgcctggaagcagatgaaaatgttgaaaataatacgagaact
gtcctgaacaaggagctggatgcagagaaacatgtgactttttccaaaaggaaaaccaaa
gaaagtacagaatcaggatttcttgcagtatcttcatcttctatgcaagaacctggttca
caagattcaactttgctgaatgataagggatcagaggaagtcatacaagaacttcgtgat
tgcttgcccatctgggtcactcaaaaccagatgttagatctccttagctgctcagatgga
aatgtcattgaagcagtttctaatttctatgagcgtgaaactgaatttcgtgagcaggtc
attgggcatacaaattctgtatgtacatctcagacaagctcactcaatgattctgtgtca
ctatctaaactgggttctgtgggaagcagccctcagaaaatggaggatattcatggtagc
caaagctacagtttactcaacattaggagttccatgaagagcagcagtctctcttctggg
aaaaggaagaaaaaccttgacaaaaagtcaattaagaaaggaaaagttggctcaaaacca
gaatctggtggctcgaaacaatctacaataacaaggttcttcagtaagatagtgagtaat
gattctcaaagtggggatggtatgtctgaacaactttctgatgatgaaaattcatttcca
agtgaggttatcacatcttatgaagaacaggttgagcagttcattaagatagtaaatgtt
gatgaatcatcaagatactatgtttcctccatcctgaagaagacaaaaggagatattaat
atggctctggacatatactatagtaaacctgagggtaaccttggtgagaatgaagagagg
ttggtggtcagtagcaaatcgattcaacctgaatgctgtatccaaagttgcagttctgag
ctagagaaaaaagtatcagagaaggaatcaggaaatatagttgaagctaaggggctatca
agagagactatagctgcaactcttgtatcattaccgccggaaaaatattctccaatagag
cacgcatgctggaagcttgggcagcctgccccatatttacatcttgctcggacttttgat
ctggttgagggtgagaagggcaagataaaagcagcttctatgctgtgcaatatgtttaga
agtttgttggccttgtctcctgaggatgtgatacctgctgtatatctctgcacaaataag
attgctgctgaccatgaaaatatggaactaaatattggtggaagtatagtcacatctgca
atggaagaggcatgtgggacaagcaggtctaaaataagggccatgtacaatagcttaggt
gatcttggtgatgttgctcaagtatgccgacaaacacagtcattccttgcccctccttca
ccgctactaattaaagatgtgttttccatgctccgaaatataagtgtacaaacaggcagt
ggaagtattgttcgaaagaaaagccttattttgaatctcatgcggtcctgtagagagaag
gaaataaagtttcttgttagaactttggttaggaatttacgaattggggcaatgatgaga
actgttcttcctgcattggctcaagctgttgtcctgcattcctctccaaacttttatcat
aaaggaacaacagaaaacataaaggagaagcttcagtgtctttctgcagcagttgttgaa
gcatataatatacttcccaatttggatttgctcattccttctctcctggacaaaggcatt
ggattttcttcatcaagtttgtctatggttccaggaatacctattaagccgatgcttgca
aaaatcaccaatggagtccctcaagctttaaagctcttccaaaataaagcttttacatgt
gaatataaatatgatggtcagcgcgcccaaattcacaaactagttgatggatcggtgcgt
atcttttcaagaaatggggatgaaacgacatcaaggtttccagatttggttagtgtggtc
agggaatcatgtaagcctgatgcattgactttcatactggatgctgaggtagttgcaatt
gatagaaagaatggcagcaagctcatgtccttccaggaattatcttcacgagagagagga
agcaaagattccttgatcacattggatagcataaaggttgacatttgtgtctttgtcttt
gatatcatgtttgctaatggaaaacagcttttggatattcctctgcgtcaaagaagaaaa
tatttgaaggatttgtttaacgaccagaaattgggttactttgaatatgcagaggaaaca
acagtggaagcagatgatgcttcaaccaatgaagccacattgactaaaataaatttgttt
cttgaagaagcatttcgctcctcatgtgaaggaattatgattaaatctctagatattgat
gctggatattctccatctaagcgtactgacacatggttaaaggtcaagcgagattatgtg
gaaggattgaatgactcacttgatttagtcccaatcggtgcttggcatggcaatgggaga
aaagcaggctggtatagtccattcctcatggcttgttacaaccctgacacagaggaattc
caaagtgtatgtcgtgtcatgtcagggttctcagataatttctacaaagagatgaaagag
ttctttaatgaagacaagatattatccaaaaagccaccttattatcagacagctgagcta
cccgatatgtggtttactccagaacttatttgggaaataagaggggcagacttcactgtg
tcaccagttcatcaggcagccataggtttagttcatccatcccgtggcatctcagtacga
tttccaaggttcattcgacctataatggatagaagaccagaggaatgtagcacagctgca
gatatagctgatatgtttcattctcagaccagaaagatggatgtaacacaccataattga
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