Vibrio ruber: RND59_04025
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Entry
RND59_04025 CDS
T09542
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vru
Vibrio ruber
Pathway
vru02020
Two-component system
vru02040
Flagellar assembly
vru05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RND59_04025
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
RND59_04025
09142 Cell motility
02040 Flagellar assembly
RND59_04025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vru03021
]
RND59_04025
Transcription machinery [BR:
vru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RND59_04025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
rve
HTH_21
Motif
Other DBs
NCBI-ProteinID:
WNJ96274
LinkDB
All DBs
Position
1:884732..886204
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AA seq
490 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEDAHDEVNSQE
EKTETLKEATADVADSEPEPQDSSELIEKSEISNELEIDTTWDDVYSANTGSTGISLDED
TPVYQGETTQTLQDYLLWQLDLTPFSDTDRAIALAIIDAIDDYGYLTLSLEDILESVKSE
EDDDIELDEIEAVRKRIQQFDPLGVASLNLQDCLLLQLATYPSDTPWLSEARRLLTDHID
QLGNRDYKLIQKEAKLKEDELRSALQLIQELNPRPGNDINAEHAEYVIPDVSVFKDRGKW
VVAINPDSMPRLKINQQYAELGRGNGADSNYIRTNLQEAKWLIKSLESRNETLLKVAKCI
VEHQHDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHV
STDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGI
SPSSQRKRLL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtcactacaactcaagttaggtcaacagttagccatgacacctcagttgcag
caagcgattcgattgctgcaactttcgacgttagatctccagcaagagattcaggaagca
ctcgattccaacccactacttgatgttgaagatgcacatgatgaagtcaattcccaagaa
gaaaaaacagaaacgttaaaagaagccactgctgatgtcgctgatagcgagccggagcca
caagatagctcagaactgattgaaaaatcagaaatcagcaatgaacttgaaatcgatacg
acttgggatgatgtctacagtgccaatacaggtagtaccggtatttcactcgatgaagat
acacctgtttatcagggtgaaaccacgcaaacactacaggattacctgctgtggcaatta
gatttaacccctttcagtgatacggatcgagccattgcgctggcgatcattgatgccata
gacgactacggttatctgacactgtctcttgaagacattctggaaagtgtcaaaagtgaa
gaagatgacgatatcgagctggatgaaatcgaagcagtcagaaagcgtattcagcaattt
gatcctttaggtgtcgcatctctgaatctgcaggactgcctgttactacaactggcaaca
tatccaagtgacacaccgtggctcagtgaagccagacgcctgttgacagaccatatcgat
cagttaggaaaccgggattacaaactgatccaaaaagaagcaaagctaaaagaagacgaa
ttacgctccgctttgcaactcattcaagaactcaacccccgccccgggaatgatattaat
gcagaacatgctgaatatgtcattccggatgtttcggtcttcaaagatcgggggaaatgg
gtcgtcgctatcaacccggacagtatgccaagattaaaaattaaccagcaatacgcagaa
ctgggacggggaaatggcgcagacagtaattatatccgaacgaatttacaagaagcaaaa
tggttaattaaaagtttagaaagtcgaaacgagacgttgctcaaagttgccaagtgtata
gttgaacatcagcacgatttcttcgagtatggggaagaagcaatgaaaccgatggttctc
aatgatgtcgcccttgccgttgacatgcatgaatcaaccatctcgcgggtcacaacccaa
aagtttatgcatacccctcgggggatattcgagctgaagtactttttctctagccacgta
agcacagacaatggtggagaatgttcatcaaccgcaattcgcgcactgatcaaaaaactg
gttgccgcagaaaacccggcaaaaccactcagtgacagtaaaattgcaacactactagct
gatcaggggattcaggtcgctagacgtaccattgcgaagtaccgagagtctttgggtata
tccccatcgagtcagcgtaaacgcctgttataa
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integrated database retrieval system
