KEGG   Vibrio tapetis subsp. tapetis: A2764
Entry
A2764             CDS       T05424                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
vta  Vibrio tapetis subsp. tapetis
Pathway
vta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A2764 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vta03019]
    A2764 (rnr)
   03016 Transfer RNA biogenesis [BR:vta03016]
    A2764 (rnr)
Enzymes [BR:vta01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A2764 (rnr)
Messenger RNA biogenesis [BR:vta03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A2764 (rnr)
Transfer RNA biogenesis [BR:vta03016]
 Prokaryotic type
  tRNA degradation factors
   A2764 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind
Other DBs
NCBI-ProteinID: SON50730
UniProt: A0A2N8ZFQ7
LinkDB
Position
A:complement(2910400..2912895)
AA seq 831 aa
MSDNTHNDPHADRESKKYENPVPSREYITEFLTQQNVPMNRNDLFEVLGLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLELIKGYVIGHKDGHGWVRPEGSVGKDNDILLPHH
QMRSIIHGDFVLVQATGKDKRGRKEGRLVRVLEARNSQIVGRFFLEYDHSFVVADDSRIC
HDIMIPNEHKGGARMGNVVVIEITDRGTRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PNVWPIEVDKQIVDLKEEVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVFCEAKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISSTGKLSGYKHYEAVMNSHARLTYNKVGDILDGNEELRERYKPVVGHLEELHKM
YKVLKSARDDRGAIEFETVEAKFIFNADRKIDRIEAVIRNDAHKIIEECMILANIASASL
VEKAKEAALFRVHESPGEERLVGFRDFLSELGLDLSGGLSPTPTDYAELIKKIGERQDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKDAGTN
TDRWTPTGGYHYSFDDMDVFGEQCSMTERRADDATREVSDWLKCEYMQDHVGEVLDGVIA
NVTGFGFFVRLTELHIDGLVHISSLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLETRQIDFELEETSRKLRGKGKTAKKRAAEADKKAASTKKATVKSRKPGAKAKAMVEP
TKRPDGSMDTSGKPKKKKRKSPAAKARRKEARAKKAQSSASNNGPKGIENE
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgtccgataacacccataacgatccgcatgccgatcgtgaatccaagaaatatgaaaat
ccagtaccaagtcgtgagtacattaccgagtttttgactcaacaaaatgtgccaatgaat
cgtaatgacttgtttgaagtactgggtttatctggtgaagagcaatacgaaggactaaga
cgtcgccttcgcgcgatggagcgggacggtcaactcgtatttactcgtcgtcaatgttac
gcactgccagaaaagctcgaactcattaaagggtatgttattggccataaagatggtcat
ggctgggttcgccctgaaggcagtgttggtaaagacaacgacatcttgctacctcatcac
caaatgcgttcaattattcatggcgatttcgttcttgttcaagcgacaggaaaggataaa
cgaggtcgtaaagaagggcgtttagttcgagtattagaagcccgaaatagccaaattgtc
ggccgattcttcttagaatacgatcactcttttgtggtcgctgatgattcccgaatttgt
catgacatcatgatccctaatgagcataagggtggtgctcgtatggggaatgtcgttgta
attgaaattaccgatagaggcactcgctcgcgaggcatgatgggtaaagtggttgaagtg
ctgggcgaaaacatggcgccgggcatggaaacacaaatagccattcgtacacaccagatt
cctaatgtgtggcctattgaagtcgacaaacaaattgtcgatcttaaagaagaagtccct
gaggaagcaaagaaagggcgtgtagacttacgcgacctgcctcttgttactattgatggt
gaagatgctcgtgactttgatgatgctgtattctgtgaagcgaaaaaaagcggtggctgg
cgtttatgggtcgcgattgctgatgtgagctattacgttcgcccagatagcgcgctagac
aaagaagccatcaaccgaggtaactctgtttatttcccttctcaagtcgtgcctatgctg
ccggaagttctgtctaatggactgtgttcattgaaccctcaagttgatcgcttgtgtatg
gtttgtgagatgacaatttcatcaacaggtaagctatcgggttacaagcattacgaagcc
gtaatgaattctcatgcgcgcctgacttacaacaaagtcggcgatatcctagatggtaac
gaagaactccgtgagcgttataagcccgttgttggccatttagaagagttgcataaaatg
tacaaagtgcttaagagtgcccgtgatgatcgtggtgctattgagtttgaaactgtagaa
gcgaaattcatctttaacgcggatcgaaaaattgaccgcattgaggctgtgatccgtaat
gatgcacacaaaatcattgaagaatgtatgattttggccaacatcgcgtcagcgtctttg
gtggaaaaagcgaaagaagcggcgttgtttcgagtacacgaatcccctggagaagaaagg
ctagtgggcttccgtgacttcttgagcgagttaggtttagatctctctggtgggctttct
ccgacgccaaccgattatgcagagctgatcaaaaagattggtgagcgccaggacaaagag
ctgattcaaaccatgctattgcgctcgatgaagcaagcggtatataacgcagataatgca
ggccactttggcttagcattgaagcgctacgcgcactttacgtcgccaattcgtcgttac
ccagatttactgcttcatcgtgcaatcaaatatttgattgctaaagatgcgggcacaaat
accgatcgttggaccccaacaggggggtatcattattcgtttgatgatatggatgtattt
ggtgagcagtgttcaatgaccgaacgtcgagcggatgatgcgacacgtgaagtatctgat
tggctcaaatgtgaatacatgcaagatcatgtcggtgaagtgctagatggtgtgattgcc
aatgtgaccggctttggtttctttgtaagattaactgagctgcacattgacggtttagtc
cacatttcatctttggcgaacgattactatcaatttgaccctattggtcaaagacttatc
ggtgaaagtttcggtaacatctatcgcttaggcgatgcggtgaaagtgaaagtgttggct
gtgaacctagagactcgccaaattgactttgaattagaagaaacaagccgtaagctacgc
ggcaaaggtaagacggctaagaaacgtgctgcagaagccgataaaaaggccgccagcact
aaaaaagcgacggtcaaatctcgtaagccaggtgcaaaagcgaaagccatggtcgagccg
accaagcgccccgatggctcaatggataccagcggtaagccaaaaaagaaaaaaagaaag
tctccagcggcaaaagcacgcagaaaagaagctcgtgctaaaaaagcccaatcaagtgca
agcaataatggtccgaaaggaatagaaaatgagtaa

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