Vibrio tapetis subsp. tapetis: A2764
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Entry
A2764 CDS
T05424
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vta
Vibrio tapetis subsp. tapetis
Pathway
vta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A2764 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vta03019
]
A2764 (rnr)
03016 Transfer RNA biogenesis [BR:
vta03016
]
A2764 (rnr)
Enzymes [BR:
vta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A2764 (rnr)
Messenger RNA biogenesis [BR:
vta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A2764 (rnr)
Transfer RNA biogenesis [BR:
vta03016
]
Prokaryotic type
tRNA degradation factors
A2764 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
SON50730
UniProt:
A0A2N8ZFQ7
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All DBs
Position
A:complement(2910400..2912895)
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AA seq
831 aa
AA seq
DB search
MSDNTHNDPHADRESKKYENPVPSREYITEFLTQQNVPMNRNDLFEVLGLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLELIKGYVIGHKDGHGWVRPEGSVGKDNDILLPHH
QMRSIIHGDFVLVQATGKDKRGRKEGRLVRVLEARNSQIVGRFFLEYDHSFVVADDSRIC
HDIMIPNEHKGGARMGNVVVIEITDRGTRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PNVWPIEVDKQIVDLKEEVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVFCEAKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISSTGKLSGYKHYEAVMNSHARLTYNKVGDILDGNEELRERYKPVVGHLEELHKM
YKVLKSARDDRGAIEFETVEAKFIFNADRKIDRIEAVIRNDAHKIIEECMILANIASASL
VEKAKEAALFRVHESPGEERLVGFRDFLSELGLDLSGGLSPTPTDYAELIKKIGERQDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKDAGTN
TDRWTPTGGYHYSFDDMDVFGEQCSMTERRADDATREVSDWLKCEYMQDHVGEVLDGVIA
NVTGFGFFVRLTELHIDGLVHISSLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLETRQIDFELEETSRKLRGKGKTAKKRAAEADKKAASTKKATVKSRKPGAKAKAMVEP
TKRPDGSMDTSGKPKKKKRKSPAAKARRKEARAKKAQSSASNNGPKGIENE
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataacacccataacgatccgcatgccgatcgtgaatccaagaaatatgaaaat
ccagtaccaagtcgtgagtacattaccgagtttttgactcaacaaaatgtgccaatgaat
cgtaatgacttgtttgaagtactgggtttatctggtgaagagcaatacgaaggactaaga
cgtcgccttcgcgcgatggagcgggacggtcaactcgtatttactcgtcgtcaatgttac
gcactgccagaaaagctcgaactcattaaagggtatgttattggccataaagatggtcat
ggctgggttcgccctgaaggcagtgttggtaaagacaacgacatcttgctacctcatcac
caaatgcgttcaattattcatggcgatttcgttcttgttcaagcgacaggaaaggataaa
cgaggtcgtaaagaagggcgtttagttcgagtattagaagcccgaaatagccaaattgtc
ggccgattcttcttagaatacgatcactcttttgtggtcgctgatgattcccgaatttgt
catgacatcatgatccctaatgagcataagggtggtgctcgtatggggaatgtcgttgta
attgaaattaccgatagaggcactcgctcgcgaggcatgatgggtaaagtggttgaagtg
ctgggcgaaaacatggcgccgggcatggaaacacaaatagccattcgtacacaccagatt
cctaatgtgtggcctattgaagtcgacaaacaaattgtcgatcttaaagaagaagtccct
gaggaagcaaagaaagggcgtgtagacttacgcgacctgcctcttgttactattgatggt
gaagatgctcgtgactttgatgatgctgtattctgtgaagcgaaaaaaagcggtggctgg
cgtttatgggtcgcgattgctgatgtgagctattacgttcgcccagatagcgcgctagac
aaagaagccatcaaccgaggtaactctgtttatttcccttctcaagtcgtgcctatgctg
ccggaagttctgtctaatggactgtgttcattgaaccctcaagttgatcgcttgtgtatg
gtttgtgagatgacaatttcatcaacaggtaagctatcgggttacaagcattacgaagcc
gtaatgaattctcatgcgcgcctgacttacaacaaagtcggcgatatcctagatggtaac
gaagaactccgtgagcgttataagcccgttgttggccatttagaagagttgcataaaatg
tacaaagtgcttaagagtgcccgtgatgatcgtggtgctattgagtttgaaactgtagaa
gcgaaattcatctttaacgcggatcgaaaaattgaccgcattgaggctgtgatccgtaat
gatgcacacaaaatcattgaagaatgtatgattttggccaacatcgcgtcagcgtctttg
gtggaaaaagcgaaagaagcggcgttgtttcgagtacacgaatcccctggagaagaaagg
ctagtgggcttccgtgacttcttgagcgagttaggtttagatctctctggtgggctttct
ccgacgccaaccgattatgcagagctgatcaaaaagattggtgagcgccaggacaaagag
ctgattcaaaccatgctattgcgctcgatgaagcaagcggtatataacgcagataatgca
ggccactttggcttagcattgaagcgctacgcgcactttacgtcgccaattcgtcgttac
ccagatttactgcttcatcgtgcaatcaaatatttgattgctaaagatgcgggcacaaat
accgatcgttggaccccaacaggggggtatcattattcgtttgatgatatggatgtattt
ggtgagcagtgttcaatgaccgaacgtcgagcggatgatgcgacacgtgaagtatctgat
tggctcaaatgtgaatacatgcaagatcatgtcggtgaagtgctagatggtgtgattgcc
aatgtgaccggctttggtttctttgtaagattaactgagctgcacattgacggtttagtc
cacatttcatctttggcgaacgattactatcaatttgaccctattggtcaaagacttatc
ggtgaaagtttcggtaacatctatcgcttaggcgatgcggtgaaagtgaaagtgttggct
gtgaacctagagactcgccaaattgactttgaattagaagaaacaagccgtaagctacgc
ggcaaaggtaagacggctaagaaacgtgctgcagaagccgataaaaaggccgccagcact
aaaaaagcgacggtcaaatctcgtaagccaggtgcaaaagcgaaagccatggtcgagccg
accaagcgccccgatggctcaatggataccagcggtaagccaaaaaagaaaaaaagaaag
tctccagcggcaaaagcacgcagaaaagaagctcgtgctaaaaaagcccaatcaagtgca
agcaataatggtccgaaaggaatagaaaatgagtaa
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