Vigna umbellata (ricebean): 124848331
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Entry
124848331 CDS
T09662
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03020
RNA polymerase
vum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124848331
09124 Replication and repair
03420 Nucleotide excision repair
124848331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124848331
03400 DNA repair and recombination proteins [BR:
vum03400
]
124848331
Enzymes [BR:
vum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124848331
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124848331
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124848331
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
DUF5938
Motif
Other DBs
NCBI-GeneID:
124848331
NCBI-ProteinID:
XP_047181939
LinkDB
All DBs
Position
Unknown
AA seq
1841 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKLALRIRNPKNRLKKILDACKNKGKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS
LLGCRKITKRDTFIPKDVFMNILMWWEDFDGKVPTPAILKPEPLWTGKQVFNLIIPKPIN
LIRYSSWHSENERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQHAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
LATEIAPSGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN
ADVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQKFDESEGFKP
NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPASPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPFNSSGSPDY
SPSSPQYSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGTR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgatttccgttctctccggcggaggtcgccaaagtccggatggttcagttc
ggaatactcagtcccgatgagatcagacaaatgtctgtggtgcaaattgagcacggtgag
acgacggagagagggaaaccgaaggttggaggattgagtgaccctcgacttggaactatt
gacagaaagctcaagtgcgagacttgcacggctagtatggctgaatgtcctggccacttt
ggacacttggagcttgctaagccaatgtttcacattgggtttttaaagacagtgttgact
ataatgcgttgtgtttgcttcaactgctctaaaattctagctgacgagaatgatcacaaa
tttaagctagctttgaggatcaggaatcccaagaacaggctgaaaaagattctggatgct
tgcaaaaacaaaggcaagtgtgaagggggagatgaaattgatattcctggacaagatacc
gatgaaccagttaaaaagagtcgcggtggctgtggtgctcagcaaccaaagattacgatt
gaggggatgaaaatgattgcagagtacaaagctcaaaggaaaaaaagtgatgaccaagaa
cagcttcctgaacctgtagagaggaaacagaccctttctgcagaaagggttcttggtgtt
ctgaaaaggataagcgacgaggactgtcagttgttgggcttgaaccctaagtatgcccgt
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgtg
atgatggacacatcctctaggagtgaggatgatttaactcatcagctggctatgatcatc
aggcacaatgagaatcttaagagacaggagaggaacggatctcctgcacatattatttct
gagtttgctcagttattgcagttccacattgcaacatattttgataatgagttgcctgga
ctgccaagggctactcaaagatccggaaggcctatcaaatcaatatgtagcaggctcaag
gcaaaagaaggacggattagaggtaacttgatgggtaaaagagttgatttttcagctcga
acagtcattacacctgatccaacaatcaacattgatcaattgggagtgccgtggagtatt
gctttgaatctaacataccctgagaccgtgactccatacaacattgaaaggttgaaggaa
cttgttgagtatggaccccatcctccacctggaaaaactggtgccaagtacatcattcga
gatgatggacaaaggctcgatctcagatatttaaagaaaagtagtgatcaccatttggag
cttgggtacaaggttgagcgtcatttgaatgatggagactttgttctcttcaatcgtcag
cctagtcttcataaaatgtccatcatggggcatagaatcaaaatcatgccatattctaca
ttccgacttaacttgtctgtaacttcaccatataatgctgattttgatggggatgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggtgttggaacttatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaggccagtgatgggaattgtccaagattca
cttttaggatgcagaaaaatcactaagagagatacttttatcccaaaggatgtttttatg
aacatattgatgtggtgggaagattttgatgggaaagttcctactcctgcaatattgaag
ccagaaccattatggacagggaaacaagttttcaatctcatcattcctaagcctataaat
ctaattaggtattctagttggcacagtgagaatgaaaggggatccataacccctggggat
accatggtcagaattgagaaaggtgaactacttactggaacactttgcaaaaagacactt
ggaacatctactggaagtctcattcacgtgatttgggaagaggttggccctgatgcagct
cggaaatttcttgggcatactcagtggcttgtaaattactggcttttgcagcatgctttt
agcattggaattggtgatacaattgctgatgcttccactatggaaaccataaatcagact
atatcagcagctaaggagaaagtgaaacaacttatcagggatgcccaagagaaaaagttg
gaggctgagcctggtcggacaatgatggattcatttgaaaacagagtgaatcagacacta
aatagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatccgagagcaacaat
ctgaaagcaatggtgacagctggttccaaaggaagttttatcaacatatctcaaatgact
gcttgtgtgggtcaacagaacgttgagggtaaacgaattccatatgggttcatagatagg
acattgcctcatttcacaaaagatgattatgggcctgaaagtcgtggctttgtggagaac
tcatatctgcgaggattgacccctcaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgccgtgaagacatctgaaactgggtacatccagaggcgactggtg
aaggctatggaggacatcatggttaaatatgatgggactgttagaaattctttgggagac
gtcatacagtttctttatggggaagatggtatggatgcggtttggattgaaacacagaag
ctggattcacttaaaatgaaaaagacagaatttgatagggtgtttaggtatgaatttgat
gatgaaaactggaagcctacctacatgcttgaagagcctgtagaagacttaaaaaccatc
cgagaatttcgtaatgtgtttgaggctgaggttcagaaacttgaagctgatagatatcaa
cttgcaactgagatagcccctagtggtgacagttctctcccactgcctgttaacttgaag
aggcttatctggaatgctcagaagacatttaaggttgatttccgaaggccttctgatatg
cacccaatggaaattgtggaagccattgataagctgcaggagcggcttaaggttgttcct
ggtgaagatcttttaagtcaagaagctcaaaagaatgctactctcctgtttaacattctt
cttcgcagcacttttgcaagtaaaagggtcttggaggaatacaggctttctcgtgaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcgctcgtagcctctgga
gaaatgattggttgtgtagctgcccaatcaattggtgaacctgctactcagatgactctt
aacactttccattatgctggtgttagtgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacaccttctctgtctgtttacttgaat
gctgatgttggtaagactaaagagagagccaagagtgtgcagtgtgctttagaatatacc
actctaaggagtgtgactcaagctacagaggtgtggtatgatccggatccaatgagtaca
ataattgaagaggatgttgatttcgtgaagtcctactatgaaatgcccgatgaagaagtt
gcccttgaaaaaatctcaccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaaccttgaatttgatgatgat
ttgacttgtatatttaatgatgataatgctgaaaaacttatacttcgtatccgaattatg
aatgatgaagcacccaagggtgagattcaggatgaatctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttacgtggtatccctgacatcaac
aaagtttttataaagaatactaaaatccagaagtttgatgagagtgaaggttttaagcct
aatgaggaatggatgcttgatactgaaggtgtcaaccttctagctgtgatgtgccatgaa
gatgttgatgcgaccagaaccacaagcaaccacttaatagaagttattgaagttcttggt
attgaggcagttcggcgagctcttttggatgaattgcgtgttgtcatttcgtttgatggt
tcctatgtcaattacaggcatttggctattctttgtgatacaatgacttatcgggggcat
ctgatggccattacacgtcatggtatcaaccggaatgatactgggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagtatatgctgagactgattac
ttaaggggtgtcactgaaaacattatgctaggtcagcttgcccccattggcacaggtgaa
tgtgcattgtatcttaatgatgagatgctgaagaatgccattgagctccaactgcctagt
tatatggatggtcttgattttggcatgactcctgctcgctctccaatatctggaactcca
tatcatgaaggcttgatgtctcctagttatttgttgagtccaaatttgcgtctgtctcct
acgtcggatgcccagttttcaccttatgttggtgggatggcgttttctcccacctcatct
cctgggtacagtccatcatctccaggctatagtccatcatcgcctgggtacagccccaca
tcacctgggtacagtcccacatctccgggctacagtcccacatcaccaggttacagtccg
acctctcccacatatagccctagttctccaggatatagtcctacaagtccggcttattcg
ccaaccagtccatcctactctcccacatcacccagctatagcccaacatcacccagctac
agtcctacatcacccagctacagtcccacatcacccagttatagcccgacttctcccagc
tacagcccgacttcacctgcatacagccccacttcacctgcctatagccccacttcacct
gcttacagtcccacttcaccttcctacagtcctacgtcaccttcttatagtcctacctca
ccttcatacagccccacttcaccctcttacagccctacctccccatcatatagccctgca
tcccctgcttacagccccacttcacctggatacagccctacgtcaccctcatatagccca
acatccccatcgtatagtcctacttcccctagttacaatccccagtcagcaaagtacagt
ccttcgttagcatattctccaagcagtccaagattgtctccatcaagtccatatagtccc
acatccccaaactacagccccacgtccccatcatattcaccgacatcaccgtcttattca
ccatcaagccccacatacagtcccagcagcccatttaattctagtgggagcccagactat
agcccaagttcaccccaatatagtcccagtacgggttactcaccaagtcaacctggttac
tcaccatcatcaaccagccagtacactcctcaaactagtgataaggatgatagaggcact
cgctga
DBGET
integrated database retrieval system
