Vitis vinifera (wine grape): 100253258
Help
Entry
100253258 CDS
T01084
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100253258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100253258
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100253258
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100253258
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100253258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
100253258
NCBI-ProteinID:
XP_002281594
UniProt:
F6HLX2
LinkDB
All DBs
Position
10:join(13219334..13219695,13222202..13222582,13232689..13232851,13233083..13233193,13240512..13240580,13249087..13249173,13257703..13258551)
Genome browser
AA seq
673 aa
AA seq
DB search
MEDAEGVLSFDFEGGLDAAPGTAATVAPLIQSDATAAAAAPSSVVSAEPTPGGAPGRRSF
RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECN
MYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNPYNQQTE
KSQILQGSNAVNLGTVAKSSTTEAINVQQQQVQPPQQQVSQTPMQNLPNGLPNQANKTAS
PLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRH
FQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLP
VKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPDNGGENPDI
VPFEDNEEEEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGARPIPSMRGFP
PVMMGADGFSYSAVPPDGFAMPDIFGVGPRAFPPYGPRFSGDFTGPASGMMFPGRGQPGA
VFPASGYGMMMGPGRAPFMGGMGVPAAAPTRAGRPVGMPPMFPPPPPPNSQNNRTKRDQR
TPVNDRNDRYSGGSDQGRGQDMAGPDDETQYLQGLKSQQDDQFGGGNSFRNDESESEDEA
PRRSRHGEGKKKR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcggaaggagttctgagttttgacttcgagggcggcctcgacgctgctccc
ggcacagcggccacggtcgcgcctttgatacaatcggacgcgaccgccgcggcggcggct
ccatcttccgtcgtctccgcggagcccactcctggcggcgcccccggcaggcgcagcttt
cggcagacggtgtgccggcactggctgcgcagcctctgtatgaaaggcgacgcctgcggc
ttcctccaccagtacgacaagtcgcgcatgcctgtttgccgattctttagattgtacgga
gagtgtcgtgagcaggactgcgtgtacaagcataccaatgaagatatcaaggagtgtaac
atgtacaagttgggtttttgtccaaatggttctgactgccggtataggcatgcaaagctg
cctggacctccacctaccatggaagaagtctttcagaagattcagcagttgagttctttc
aactatggctcctcaaacaggttttatcaaaaccgcaacccatacaaccaacaaacagaa
aaatctcagattctgcaaggttccaatgctgtcaatctaggtacagttgcaaaatcatca
accacagaggctattaatgtgcagcaacaacaagttcaaccaccccaacaacaggtcagc
cagaccccgatgcaaaatcttcccaatggcctgcctaatcaggcgaacaaaactgcttca
ccacttcctcaaggaatatctaggtattttattgttaaaagctgcaaccgtgaaaatttg
gaattatctgtacaacaaggggtatgggcaacccaaaggagcaatgaggctaaactaaat
gaagcttttgacagtgttgagaatgtgattttgatcttttcagtgaaccggactcgccat
ttccagggttgtgcaaagatgacatctaaaattggtggatttgttggtggagggaattgg
aaatatgcgcatggaactgcacactatggacggaatttctctgtcaaatggttaaagcta
tgtgaactgtcattccacaaaactcgccatttgaggaatccatacaatgaaaacctacca
gtgaagataagcagagactgccaggagttagagccgtcaattggtgaacagttggcttcc
ttactatatcttgagccagacagtgaacttatggcaatctcacttgcagcagaatcaaaa
cgtgaggaggaaaaagcaaagggagtcaatccagacaatggaggtgagaatccagatatt
gttccatttgaggacaatgaagaggaggaggaggaagaaagtgaagaagaggaggagagc
tttggccaggctcttgggccagcagctcaaggcagaggaaggggcagaggaatcatgtgg
cctcctcacatgccactagcacgaggagccagacctattcctagcatgcggggcttcccc
cctgtcatgatgggtgctgatgggttttcttatagtgctgttccaccagatggttttgca
atgccagatatttttggtgtgggtccccgtgctttccctccatatggtcccaggttttct
ggggatttcacaggtcctgcatctggcatgatgtttcctggccgcggtcaaccgggagct
gtctttccagcaagtgggtatgggatgatgatgggtccaggacgtgcaccattcatggga
gggatgggagttcctgcagcagccccaactcgagctggtcggccagttggtatgcctcca
atgttcccaccgcctccacccccaaactcgcagaacaatcgaactaaaagggatcagagg
acaccagttaatgaccgaaatgacagatacagtgggggctcagaccagggcaggggccaa
gatatggcaggtccagatgatgagacacaatatctgcaaggattgaagtctcaacaggat
gatcaatttggaggtggaaatagctttagaaatgatgaaagcgaaagcgaggacgaggct
ccaaggcggtcaaggcatggagagggaaagaagaagcggtga
DBGET
integrated database retrieval system
