Vibrio vulnificus YJ016: VV2541
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Entry
VV2541 CDS
T00150
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03030
DNA replication
vvy03430
Mismatch repair
vvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VV2541
03430 Mismatch repair
VV2541
03440 Homologous recombination
VV2541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvy03032
]
VV2541
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV2541
Enzymes [BR:
vvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VV2541
DNA replication proteins [BR:
vvy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VV2541
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VV2541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAC95305
UniProt:
Q7MIH5
LinkDB
All DBs
Position
I:complement(2568588..2572067)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGN
GIKPIIGADFKMQSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEW
LIELSEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYVELIRTGRSDEET
YLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGMAETEFLVMKSKEGL
EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRIL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPWPEKVWLEGERETLGLY
LTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALERYADLLEKDKILVVSGQVSFDDFNGGLKMTAREVMDLGSAREKYA
RGVSVSIAASQIDDQFFERFSRILEPHKAGTIPVNVYYQRADARARLTLGTEWRVTPSDT
LLDELKMLLGKDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccaaaatttgttcacctgcgaatacacagtgatttttcaatggtggatggc
atcaataaagttccggctctggtcaaacaggtggcggcgctcggtatgcctgcaatggcg
ctgacagactttaccaacctatgtggcttggtgaaattttatggcgcagcccatggtaac
ggcattaagcctatcattggtgctgatttcaaaatgcaatcgcccgaatttggcgacgaa
ctcacccagctaaccgtcttggcggcagataataccggctacaaaaacctgaccctgctg
atttccaaagcctacttgcgaggtcatgttcaacatcaacctgtcatcgataaagagtgg
ttgattgagctatcagaaggattgatcatcctttcaggtgcacgtaacggtgaaataggt
aaagcactgctgaaaggcaatcaaaaattggtcgaaagctgtgttgatttttatcagcaa
cattttgccgatcgcttttatgtggagttgatccgtaccggtcgttctgacgaagaaacc
taccttcattttgccatcgaactggcagagcaatacgatctccctgtggtggccactaac
gaagtggtctttattggacaagagctgttcgacgctcacgaaattcgcgttgcgattcat
gatggctatacgttagaagatccacgtcgccctaaaaattacagccctcagcaatattta
cgcaccgaagaagagatgtgcgagctgtttgccgatattcctgaagcgcttgaaaacagt
gttgagatcgccaagcgctgcaacgttactgtgcgtctttgggaatatttccttcctgcg
tttccaaccgaagggatggcagaaaccgagttcttggtgatgaaatccaaagagggcttg
gaagagcgtctcgagtttcttttccctgatcctgagattcgcgcgcaacgtcgtcctgag
tatgacgaacgtttgcaggtcgaactcgatgtgattaaccaaatgggcttcccgggttac
ttcctgatcgtaatggagtttatccagtggtcgaaagacaacggtattcctgttggccct
ggccgtggttctggtgcgggttcgctggtggcctacgcattgaaaatcaccgaccttgat
ccgttggaatatgatctgctgttcgaacgtttcttgaacccagaacgtgtatccatgccc
gatttcgacgtcgacttctgtatggataaacgtgaccaagtgattgaccacgtggccgaa
atgtatggccgagatgcggtatcacagatcatcactttcgggaccatggcagccaaagct
gttattcgcgatgtgggccgagtacttggccacccgtttggttttgttgatcgcatttcc
aaattggtgccacccgatccaggtatgacgctggaaaaagcatttaaggcggaaccggca
ttacctgagctgtatgaagctgatgaggaagtgaaagagctcatcgacatgtgccgcatt
ttggaaggctgtacacgaaatgccggtaagcacgcgggtggggtggtgatctctccaacc
acgatcaccgattttgcgccgatttacgccgatgcagaaggtaacttccccgttactcag
tttgacaaaaacgacgttgaaaccgccggtttggttaagtttgacttcttgggactgcgc
acgttaaccattattgactgggcgttaggtttgattaacccgcgcttagagcgtgaaggc
aaagcgccagttcgcatcgagtcgatcccgctcgacgatccggcatcgttccgtatattg
caaaactcggaaacgacagcggttttccagcttgaatcgcgcggcatgaaagagctgatc
aaacgccttcagccggactgttttgaagacatcatcgcactggtggcgctgttccgtccg
gggccgttgcaatcgggcatggtagataactttatcgaccgtaaacatggccgagaagcc
atctcttacccggatgagaagtggcaacatgagtcgttaaaagagattcttgacccaacc
tacggcatcatcctgtatcaagaacaggttatgcaaatcgctcaggtactctctgggtat
acccttggtggtgcggacatgctgcgccgtgctatgggtaagaaaaaaccagaagagatg
gccaagcagcgcgctacctttgaagaaggcgcggtgaaaaatggcatcgatggcgagttg
gcgatgaaaatcttcgacttggtagagaaatttgcgggctacggtttcaacaaatcgcac
tctgctgcctacgctttggtgtcatatcaaaccctttggctgaaaactcattatccagcc
gagttcatggccgcggtaatgaccgcagatatggacaacactgaaaaagtggttggcttg
gtggacgaatgtttccgcatgaaactcacggtactaccaccggatattaactcaggtctg
taccgtttcaacgtggacgaaaatggcgcaattgtttacggtattggcgcgataaaaggg
gttggtgaaggcccgattgatgcgattctcgaagcgcgtaccaaaggtgggcacttcaaa
gacttgtttgacttctgtgcgcgcattgacttgaagaaagtcaacaaacgcgtgattgaa
aagctgatttacgcaggcgcgttggaccgacttggcccgcatcgtgctgcattaatggcg
tcattggatgacgcggtgaaagcggcgagccaacaccatcaagcggaagcatttggccaa
gccgatatgtttggtgtattgaccgatgcacctgaagaggtggaacacaaatacattcaa
gtggaaccttggccagaaaaagtgtggcttgaaggggaacgtgaaacgctgggcctttat
ttgacagggcacccagttaatgcgtatctcacggaactcaataagtacaccagttgtcga
ttaaaagacgccaccccaacgcgtcgtgatcaatcactgacactggctggcttagtgatc
gccgcccgtgtgatgaccactaagcgtggtacgcgtatcggtatcatgacattggatgat
cgcagcggtcgtatggaagtgatgttgttctcagatgcgttagaacggtatgcagatcta
ctggaaaaagataaaatcttggtggtttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgacggctcgcgaagtcatggacctcggttctgcgcgtgaaaaatacgcc
agaggggtgtctgtttcgattgccgcatcacagattgatgaccagttttttgagcgcttt
agtcggatcttagaaccgcataaagccggaacgattcctgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcacggaatggcgagtaacgcctagtgataca
ttacttgatgaattaaaaatgttgcttggtaaagaccaggtagaactcgaatttaactaa
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