Wallemia ichthyophaga: J056_003302
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Entry
J056_003302 CDS
T03457
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
wic
Wallemia ichthyophaga
Pathway
wic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
J056_003302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wic03041
]
J056_003302
Enzymes [BR:
wic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J056_003302
Spliceosome [BR:
wic03041
]
Complex C
Other components
Step II factors
J056_003302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_30
AAA_19
SLFN-g3_helicase
nSTAND3
AAA_14
Microtub_bd
TsaE
PhoH
Flavi_DEAD
AAA_16
T2SSE
ATPase
NB-ARC
Motif
Other DBs
NCBI-GeneID:
20376254
NCBI-ProteinID:
XP_009266800
UniProt:
R9AKY5
LinkDB
All DBs
Position
Unknown
AA seq
1096 aa
AA seq
DB search
MDELENLEIINLNQKITKELFNYTGIKDKVLAEFILSIHEQSKDLASFKSKLNEMGASFP
ESAINTIDRLIITMHPKYKSKSKPQSNPDQQRVFPGLSQPNQDWTDSNSFDKISKPRIQP
DPSPSTTTMTPTHSSPQVYSIYQGTVNSIKDFGAFISLNGFNSRIDGLVHVSAMSNSRVN
NPRDFLRRNQLVYVKVMSIDGHRLSLSLKDADQSNGHDLSPHLAPSKGSSSRSSKPSKSS
KHSTHSTHSAHFPDDHYRGSVKRYTSPERWEIKQLIASGAAKPSDYPDLDRDFDAPMNIR
SNQNKLDEDVDIEVRDVEPSFLKGQTKISLDLSPVRIVKAPDGSMNRAAVSGAGLAKERR
EIRQQDAQEEKDSEQNDIKSAWQDPLAQPSDRQFAQDQNVKASAAPAWKAKTFNKATTYG
KITDKTIQEQRASLPIYKLREQLVQAVRDNQVLVVVGDTGSGKTTQMTQYLAEEGFAEYG
KIGCTQPRRVAAMSVSKRVAEEVGCRLGQEVGYTIRFEDCTGPETRIKYMTDGMLQRECL
VDPDMRNYSVIILDEAHERTIATDVLFGLLKKTMKRRPDLKFIVTSATLDAEKFSTYFNG
CPIFTIPGRTFPYEIMYTKEPESDYMEASLITVMQIHLSEPPGDILLFLTGQEEIDTAAE
ILYERMKALGNQVPELIILPVYSSLPSEMQSRIFEPAPPGARKVVIATNIAETSITIDGI
YYVVDPGFVKQNAYDPRLGMDSLVVTPISQAQARQRAGRAGRTGPGKCYRLYTEAAFRNE
MLPNTVPDIQRQNLSHTILQLKAMGINDLLGFDFMDPPPAQTMITALENLYALSALDDEG
LLTRLGRKMADFPMDPSRAKMLIASVDLECSKEILTIVAMLEAQNVFYRPKEKQQQADAK
KAKFHQPEGDHLTLLAVYNGWEASRFSNPWCFENFIQARTIKRAADVRKQLVAIMDRYHH
EVISCGKNYNRVRRAITAGFFRHAAKKDPTEGYKTLVEGTPVAIHPSSSLFNRSPEWVIY
HELVLTSREYMREIITIEPKWLTEVAPTFFKTADSNKISKRKREEKVEPLYNKFEGKDDW
RISKTLRTQRGTQTFG
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggacgaattagaaaatcttgaaattataaatctaaatcagaaaattacaaaagagctg
tttaattatactggtattaaagataaggtcctagcagaattcatactcagcatacacgag
caatcgaaagacttggcctctttcaagagcaaactgaatgaaatgggggcttcgtttcct
gaatctgcgataaataccatcgataggcttatcattaccatgcatccaaagtataaatca
aaatcaaaaccacaatcaaatccagaccagcaaagagtattcccaggtttatcacagcca
aaccaagactggacggatagcaattcctttgataagattagtaaacctagaatacagcct
gatccttctccctctacaaccactatgactcctacccactcttctcctcaagtttactct
atataccaaggtaccgtcaactcaatcaaagatttcggtgctttcatcagcttaaacggt
ttcaacagtagaattgatggcttagtacacgtttccgcaatgtcaaacagtagagttaat
aacccacgcgattttctcagacgaaatcagctcgtttacgtcaaggtcatgtccattgat
ggtcaccgattgtctttatcgttaaaagacgctgatcaatcaaatggtcatgacctcagt
cctcatcttgctccaagtaaaggatcctcatctagatcttcaaaaccttctaaatcttca
aaacactccacccactccactcattctgctcacttcccagatgatcattatagaggttcc
gtaaaacgctacacttccccagaacgctgggaaattaagcaactgatcgcttctggcgcc
gcaaaaccctcagattacccagatcttgaccgcgattttgatgcccctatgaacattcgt
agcaatcaaaataaattagacgaagatgttgacatcgaagtccgcgacgttgaaccttcc
ttcttaaagggtcagacaaagattagtttggatctttctcccgtgcgtatcgtcaaggct
ccagatggatccatgaacagagccgccgtctcaggcgctggtttggccaaagagcgtaga
gaaattcgtcaacaagatgctcaagaagagaaagactcggagcaaaacgacatcaaatcc
gcatggcaagatccgcttgcacagccaagcgataggcaatttgctcaagaccaaaacgtt
aaggcgtctgccgcacctgcctggaaggccaaaacgttcaacaaagcaactacatacgga
aaaattaccgacaagactatccaagaacagagagcttcgctgccaatatataagctgagg
gagcagctggtacaggctgtaagagacaatcaagtactcgtcgtcgttggtgatactgga
tcaggtaagaccacccaaatgactcagtatcttgcagaagaaggcttcgctgagtacggt
aagattggctgtacccaaccaagacgtgtagctgcaatgagcgttagtaagagagtagcg
gaggaagttggttgtcgtcttggtcaagaagtcggctacactatcagattcgaagattgc
actggtcctgagacgcgaatcaagtacatgactgatggtatgctccagagggagtgtctt
gtcgatcctgatatgagaaattattctgtcattattctcgacgaagctcacgaacgcact
atcgccaccgatgtcctgttcggtttgctcaagaaaacaatgaaacgccgtcctgatctc
aaatttatcgtcacatctgcaacactcgatgccgaaaagttctctacatacttcaatggg
tgccctatcttcactattccaggtcgtacattcccctacgagatcatgtacactaaggaa
cctgaatctgactacatggaagcctcgttaattacggtgatgcagatccatctgtctgaa
ccacctggagacatacttttattccttactggtcaagaagaaatcgatacagctgctgaa
atcttatacgaacgtatgaaagcgctaggtaatcaagtccccgagcttattattctcccg
gtgtattcatcgttgccttccgagatgcaaagcagaattttcgaaccggctcctccaggc
gcacgtaaggttgtcattgctaccaacattgcagagacatctatcacaatagacggtatc
tactacgtcgttgatcctggtttcgtcaagcagaatgcttacgatcctcgtctcggtatg
gacagtctggtcgttacacccatctcacaggcccaggctaggcagagagcgggtagagca
ggtcgtactggaccaggaaaatgttacagactatacacagaggcggcatttaggaatgag
atgcttcctaacactgtgcccgatattcaacgtcagaacttatcccatactattctccaa
ctcaaggcaatgggtattaacgatctccttgggttcgatttcatggatccaccaccagca
cagactatgataacagctctagaaaatctctatgcgctatcggctctagatgacgaagga
ttgcttactcgcctcggtcgcaaaatggctgatttcccaatggatcctagtcgagctaag
atgttgatcgcgagtgtagacttggaatgcagcaaagaaatactaactatcgttgcgatg
ctcgaagctcaaaatgtgttttaccgtccgaaagaaaagcaacaacaagccgacgcgaag
aaagcgaaattccatcaacccgaaggcgaccacctcacactgcttgccgtgtacaacgga
tgggaagcgagtcggtttagtaatccatggtgtttcgagaactttatacaggcgcgaacg
ataaagcgtgccgcagacgttcgcaagcagcttgtagcgatcatggacagataccatcac
gaggtgattagctgtggaaagaattacaacagggtgcgcagagcgatcacagccggtttc
tttagacacgctgccaagaaggatcctacggagggatataagactcttgtggaagggaca
ccagtcgctatacacccatctagctcgctgtttaacagaagcccggagtgggttatatat
cacgagctcgttcttactagcagggagtatatgcgggagataatcacgatagagcccaag
tggctcactgaggtcgcgcctacgttcttcaagactgcagattctaataagattagtaaa
cgaaaaagggaggagaaggtagaaccgctttacaacaaatttgagggcaaggatgattgg
agaattagtaaaacactcaggacccagcgcgggacgcagacatttggatga
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