Weissella koreensis: WKK_04220
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Entry
WKK_04220 CDS
T01577
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wko
Weissella koreensis
Pathway
wko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WKK_04220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wko03021
]
WKK_04220
03400 DNA repair and recombination proteins [BR:
wko03400
]
WKK_04220
Enzymes [BR:
wko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WKK_04220
Transcription machinery [BR:
wko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WKK_04220
DNA repair and recombination proteins [BR:
wko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WKK_04220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEJ23717
LinkDB
All DBs
Position
882633..886280
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRQLEEVIYFASYVVTDGGDTPLVAKQLLSEREYRDNKASYGNRFEAQMGAEAIRTLLQ
NADMEGEVEQLKADLREATGQKRIRAVRRLDIIEAFVKSGNNPDWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPVQ
MAMELFRPFIMKELVSRELAGNIRAAKRKIDRKDEDVMDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHLPLSDEAQAEARLLMLAAGHIL
APKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFSDLNEAQTALQNKYVHLHTRVGVK
TSSFDAAKPFTDEQRSKIMVTTVGKLIFNDILPVDFPYLNEPTEDNLKKIDDKFFLEPGQ
DIHEYMNNTPIYGAFKKGYLSDIIAEVYKIYKVTETSLLLDRMKDLGYAESTKSGLTVGV
ADVTDLKEKPEIIEAAHAKVATVSKQFRRGLITDDERYTRVIDIWNKAKDDITEKLIEHF
EPDNNIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPIIANFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRELDCDTDRGLDVSAIMNGNETIEPLY
DRVLGRYAQKTVVNPETGDVIVAHNGLIDENIAKAIDAAGVKTVNIRSAFTCNTEHGVCV
HCYGRNMATGDVVEIGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGQAQISEVSGIIESIEENPADRTKEVTIKGETDTRTYTLPMSARMKFAEGDHIH
RGNTISEGSADPKEIIKVRDTMATENYIVEQIQQVYRMQGVEIGDKHIEVMARQMLRKVR
VMDPGATELLPGTLLDIAQFREANEPVLKSGKLPATARPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKNDPLIGLKENVIIGKLIPAGTGMPEYRSVKPKLDADPVVSTTEEG
ASIPSISDIENSMNL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataaatttgaaagcatgcaaatcggtttggcaagtccagataagatt
cgtagctggtcttatggtgaggtaaaaaagcctgagacgatcaattatcgaacacttaag
cctgaaaaagatgggttgtttgatgagagaattttcggaccaactaaggattatgaatgt
gcttgtggtaaatacaagcgaattcgttataagggaattgtctgtgatcgatgtggtgtg
gaagttacctcatcaaaggttcgtcgcgaacggatgggtcacattgaattagccgcacca
gtttcacatatctggtacttcaagggtattccttcacgtatgggattagttcttgatatg
tcaccccgtcaattggaagaagtaatttattttgcttcttacgttgtaacagatggtgga
gatacaccattagttgctaagcaattgttgtcagaacgtgaatatcgtgacaataaagct
agttatggaaaccgtttcgaagcccaaatgggagccgaagcaattcgtacattgttacaa
aatgctgatatggaaggcgaagttgagcagttgaaggcggacttgcgtgaagccactggt
caaaagcgtattcgtgcagttcgacgtttggatatcattgaagcctttgtaaagtcagga
aacaatcctgattggatggttatggatgtaattccagttattccacctgatttgcgtcct
atggttcaattggaaggtggccgttttgccacatctgatttgaatgatttgtaccgacgg
gttattaaccgaaataatcgtttgaagcgtttgttagagttgaacgctcctggaattatc
gtacaaaacgaaaagcgtatgttacaagaagcggttgatgccttgatcgataacggtcgt
cgtggtcgtcccgtaactggaccaggaaatcgtccattaaagtctttgtcacatatgctt
aagggtaagcaaggacgtttccgtcaaaacttgttgggaaagcgtgttgattattctgga
cgttcagttatcgacgttgggcctttcttgaagatgaaccaaatgggattgccagttcaa
atggcaatggaacttttccgtccattcatcatgaaagaattagtttcacgtgaattagct
ggcaatatccgagctgctaagcgtaagattgatcgcaaggatgaagacgttatggacgtt
ttggaggacgtgatcaaagaacatcctgttcttttgaaccgtgccccaacgttgcaccgt
ttgggaattcaagcgttcgaaccagttttggtttctggtaaggcaatgcgtttgcatcct
ttggttaccgaagcttataacgccgatttcgacggggaccagatggccattcacttgcca
ttgtctgatgaagctcaagctgaagctcgtttgttgatgcttgctgctggccacatcttg
gcacctaaggatggaaagccaatcgttgccccatcacaggacatggttatcggaaactac
tacttaacgactgaagaagctggtcgtgagggtgaaggaatgatctttagtgatcttaac
gaagcccagactgctttgcaaaacaagtatgttcacttgcatacacgagtgggagttaaa
acgtcttcatttgatgctgctaagccatttacggatgaacaacgtagcaagattatggtt
accactgttggtaagttaatctttaatgatatcttgccagttgattttccatatttgaat
gaaccgactgaagataacttgaagaaaattgatgataagttcttcttggaaccaggacaa
gatattcatgaatatatgaataatactcctatctatggtgcctttaagaagggttacttg
tcagatattattgcggaagtttacaagatctataaggttacagaaacttcactactattg
gaccgaatgaaggacttaggttatgctgagtcaactaagtctggtttgacagttggggtt
gccgacgttaccgatttgaaggaaaagcctgaaattattgaagcagcccatgctaaggtt
gcaacagtttcaaagcaattccgtcgtggtttgatcaccgatgatgagcgttatacgcgt
gttattgatatttggaacaaggctaaagatgatatcactgaaaagctgattgaacacttc
gaaccagataataacatctttatgatgtcagattctggagctcgtggtaacatttctaac
tttactcaattggctggaatgcgtggattgatggctgctcctaatggaaaaatcatggaa
ttgccaatcattgccaacttccgtgaaggtctatccgttttggaaatgttcttctcaacc
cacggagctcgtaagggaatgaccgatacggctttgaagacggccgattctggatatttg
actcgtcgtttggtcgacgtggcccaagacgttattattcgtgaattggattgtgatact
gatcgtggacttgacgtttcagccattatgaatggaaatgaaactatcgaaccattgtat
gatcgagtacttggtcgttatgctcaaaagacagttgtaaaccctgaaactggggatgta
attgttgcacataacggtttgatcgatgaaaatatcgccaaggcaattgatgctgcaggt
gttaagacggttaatattcgttcagcctttacttgtaatactgaacacggtgtctgtgtt
cactgttatggacgtaacatggctactggtgatgtggttgaaattggtgaagccgttggt
acggttgctgcccaatcaatcggagaacctggtactcaattgacaatgcgtactttccac
acaggtggagttgccggtgatgatatcactcagggacttcctcgtgtgcaagaaatcttt
gaagctcgtaaccctaagggacaagctcaaatttctgaagtatcaggaattatcgaatca
attgaagaaaatccagctgatcggactaaggaagttactattaagggcgagactgatact
cgtacttatactcttccaatgtctgcacgtatgaagtttgctgaaggtgatcacattcac
cgtggaaacacaattagtgaaggatcagctgatccaaaggaaattatcaaagttcgtgat
acgatggcaacggaaaactatattgttgaacaaattcaacaagtttaccggatgcaggga
gttgaaattggtgataagcacatcgaagttatggcacgtcaaatgttgcgtaaggttcgt
gtgatggatccaggagcaactgaattgttgccaggaactttgcttgatatcgctcaattc
cgtgaggctaatgagcctgttttgaagtctggtaagttaccagcaacagctcgtccagtt
ttgttaggaattacgaaggcctcattggagaccaattcattcctttcagcggcttccttc
caagaaacaacacgtgtcttaactgatgctgctattcgtggaaagaatgatcctttgatc
ggattgaaagagaacgttattattggtaagctaatcccagcgggaactggaatgccagaa
tatcgttcagtaaaaccaaagcttgatgctgatccagttgtttcaacaactgaagaaggg
gcaagtattccttcaatttcagatattgaaaattcaatgaatttgtaa
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