KEGG   Wallemia mellicola: WALSEDRAFT_60912
Entry
WALSEDRAFT_60912  CDS       T03142                                 
Symbol
Rpd3p
Name
(RefSeq) histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
wse  Wallemia mellicola
Pathway
wse03082  ATP-dependent chromatin remodeling
wse03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:wse00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    WALSEDRAFT_60912 (Rpd3p)
   03083 Polycomb repressive complex
    WALSEDRAFT_60912 (Rpd3p)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:wse03036]
    WALSEDRAFT_60912 (Rpd3p)
Enzymes [BR:wse01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     WALSEDRAFT_60912 (Rpd3p)
Chromosome and associated proteins [BR:wse03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     WALSEDRAFT_60912 (Rpd3p)
   HDAC complexes
    Sin3A-HDAC complex
     WALSEDRAFT_60912 (Rpd3p)
    BRAF-HDAC complex
     WALSEDRAFT_60912 (Rpd3p)
    REST complex
     WALSEDRAFT_60912 (Rpd3p)
    SHIP complex
     WALSEDRAFT_60912 (Rpd3p)
    MiDAC complex
     WALSEDRAFT_60912 (Rpd3p)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     WALSEDRAFT_60912 (Rpd3p)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    WALSEDRAFT_60912 (Rpd3p)
  Chromatin remodeling factors
   NuRD complex
    WALSEDRAFT_60912 (Rpd3p)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 18474243
NCBI-ProteinID: XP_006959453
JGI: Walse1_60912
UniProt: I4Y8Y5
LinkDB
Position
Unknown
AA seq 475 aa
MKPHRMRMVHNLVLNYGLDKKMQILKPPRASPEEMTRFHTDEYIDFLKHVTPETAADLTR
NHEIFLSGEDCPSFEGLFEFCSISAGGSIAAANRLTSGESDISVNWAGGLHHAKKREASG
FCYVNDIVLAIIELLRYHQRVLYIDIDIHHGDGVEEAFYTTDRVLTCSFHKYPDYFPGTG
STDDTGMFKGKSYSVNFPLRDGIDDESYHSVFRPTIQHIMEWYRPGAVVLQCGADSLAGD
KLGVFNLSMKGHADCVKFVKAFNLPMIVLGGGGYAVRNVSRTWTYETGLLVDKHLEEDLP
FNDYLDYYGPRYKLDVPETNMENHNTPEYLHDIQTKVFEHLKELPFAPSAQIREVPSDPW
PYSDQSDDELDERISKAANNIYDEPEMEEDDYQSTYKNRSNRINGRNRTQNFSKKKRRFF
QSAQTSNNFNNFGCGHEHTSKPQLDDFLRQIVGSSASTNTLNNQLNERISPEYNM
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgaaaccccatagaatgagaatggtacataacctagtactcaattatggtttagataag
aagatgcaaatactgaaacctcctagagcttctcctgaggagatgactagatttcataca
gacgagtacatcgatttcttaaagcacgtcacaccagagacagctgcagatctaacgaga
aaccacgaaattttcctctcaggagaagattgcccatcattcgaaggacttttcgaattc
tgctccatctctgcaggtggaagtatagcagcagcaaacagactaacttcaggtgaatct
gacatatctgttaattgggccggcggtttgcatcacgctaaaaagagagaagcatccggt
ttctgttacgtcaatgatatcgtactcgccattatcgaacttttgaggtaccatcaaagg
gttctttatattgatatcgatattcatcatggcgatggcgttgaagaggctttctatact
accgacagggtactcacttgttctttccacaaatacccagattattttcctggtacgggt
agtacggatgacactggaatgtttaaaggcaaatcttactctgttaacttccccttgagg
gatggtatcgatgatgagagttatcactctgttttcagacctacaatacaacacattatg
gaatggtatagaccgggcgctgttgttttacaatgcggcgccgacagtttagctggtgac
aaacttggtgtttttaatctctccatgaaaggtcacgcagactgtgtcaaattcgttaaa
gctttcaacttaccgatgattgtcttgggtggtggtggatacgcagtgcgaaacgtttca
cgtacatggacttacgaaactggattgctagttgataaacacctcgaagaagacctccca
ttcaacgattatcttgattattatggcccgcgttataagcttgacgtacctgaaactaac
atggagaatcacaacacgccagagtatcttcatgatatacaaactaaggtgtttgaacac
ctcaaagaattacctttcgcaccatccgcacagataagagaggtaccatctgatccatgg
ccttacagtgatcaatcagatgatgaactcgacgagaggatatcaaaagctgctaataat
atttatgatgaacctgaaatggaagaggatgactatcaatctacctacaaaaatcgtagt
aatagaataaatggtagaaatagaacacaaaatttctctaaaaagaaacgcaggttcttc
caaagtgctcaaacttctaataatttcaataacttcggttgtggtcatgagcatacgtct
aaaccacaattagatgatttcttaagacagatcgtcggttcatcagcatctactaacaca
ctcaataatcaactcaatgagaggatatcaccagagtataatatgtaa

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