Xanthomonas albilineans: XALC_0507
Help
Entry
XALC_0507 CDS
T01160
Symbol
rpoB
Name
(GenBank) probable dna-directed rna polymerase, beta subunit protein
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XALC_0507 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xal03021
]
XALC_0507 (rpoB)
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_0507 (rpoB)
Enzymes [BR:
xal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XALC_0507 (rpoB)
Transcription machinery [BR:
xal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XALC_0507 (rpoB)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XALC_0507 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
CBA15036
UniProt:
D2UBV0
LinkDB
All DBs
Position
555376..559527
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENTDPNKRSDHGLHAALKS
VFPISSYSGNAALEYVGYKLGDPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLSEFFEINTFHIDPK
EGVQLELVAERLRGETLDFDLADGDKVIVEAGKRITARHVKQLEASGIAALAVPDEYLVG
RILSHDVVDAATGELLANANDEITEEQLNAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
IGESVLYDKKYFGERSDEESKRLVAERADSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTTETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVVDGQITDEVEYLSAIEENEYVIAQANALHDAKNRLTEQ
FVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDAIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILESAIYARLRSQLIGKVANGGPNLK
KGDTISDAYLDGLKKSEWFALRMKDEDASDAIERAQKQIQAHEQEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSMIQPIEDMPYMANGETVDIVLN
PLGVPSRMNIGQVLEVHLGWAAKGLGRKIQNMLDAQANVADLRKFLTQIYNHDQKLGEDR
VDLDQFSDAELLSLSKNLTDGVPMATPVFDGATEAEIKHMLELADLPISGQTQLYDGRTG
EAFDRRTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LED
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaagaagcgtatccgcaaggatttcggcaagcagcgc
tcgatcctggaagtgcccttcctgctcgccatccaggtggattcctaccgtgagttcttg
caggaaaacaccgacccgaacaagcgctcggaccatggcctgcacgcggctctgaaatcg
gtgttcccgatctccagctacagcggcaacgccgcgctggagtatgttggctacaagctc
ggcgatccggtgttcgacgagcgtgaatgccgtcagcgcggtatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcctcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctacctcggcgaaattccgttgatgaccgacaacggcacc
ttcatcgtcaatggcaccgagcgcgtcatcgtctcccagttgcaccgttcgccgggcgtc
ttcttcgatcacgatcgcggcaagactcacagctcgggcaaattgctgtacagcgcccgc
atcattccgtaccgcggctcctggctggacttcgagttcgacccgaaggacgcgttgttc
acccgtatcgaccgccgtcgcaagctgccggtgtcgatcctgttgcgcgcgctcggttat
tcgaacgaagaaatgctgtcggagttcttcgagatcaacaccttccacatcgatccgaag
gaaggcgtgcagttggaattggtcgccgagcgcttgcgcggcgagacgctggacttcgat
ctggccgatggcgacaaggtcattgtcgaggctggcaagcgcatcaccgcgcgtcacgtt
aagcaactggaggcctccggtatcgccgcgctggccgtgcccgatgagtacctggtcggt
cgcatcctgtcgcacgacgtcgtcgatgccgcgaccggcgaactgctggccaatgccaac
gacgaaatcaccgaagagcagttgaatgcgttccgtaaggccggcgtcgacgccgtgggg
accctgtgggtcaacgatctggaccgtggtccgtatctgtccaacaccctgcgcatcgac
ccgaccaagacccagctcgaagccttggtcgagatctaccgcatgatgcgtccgggcgaa
ccgccgaccaaggatgccgcgcagaacttgttccacaacctgttcttcaccttcgagcgt
tacgacctgtccacggttggccgcatgaagttcaaccgccgcgtcggccgcaaggaggtc
atcggcgagtcggtgttgtacgacaagaagtacttcggcgagcgcagcgacgaggagtcc
aagcgcttggttgccgagcgcgccgacagttccgacatcctcgatgtgatcaaggtgctg
accgaaatccgcaacggtcgcggtgtggtcgacgatatcgaccacctgggtaatcgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgttggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtccgagggcctgaccccccaggaactg
atcaacgccaagccggtggctgccgcgatcaaggagttcttcggttcctcgcagttgtcg
caatttatggatcagaacaacccgttgtcggaagtgacgcacaagcgtcgcgtttcggcg
ttggggccgggcggtctgacccgcgagcgcgcaggcttcgaagtgcgcgacgtgcatccg
acccattacggccgcgtctgcaccaccgaaaccccggaaggcccgaacatcggtctgatc
aactcgctggcggtgttcgcgcgcaccaaccagtatggcttcctagagacgccgtaccgg
aaggtggtggacggccagatcaccgacgaggtcgaatacctctcggcgatcgaagaaaac
gagtacgtcatcgcccaggccaacgcattgcacgatgccaagaaccgcctgaccgaacag
ttcgtaccgtgccgctaccagggcgaatcgctgctcaagccgccggcggaagtgcatttc
atggacgtctcgccaatgcagaccgtgtccatcgcggccgcgttggtgccgttcctggag
catgacgacgccaaccgcgcgctgatgggcgcgaacatgcaacgccaggccgtgccgacg
ctgcgcgcgcagaagccgctggtcggcaccggtatcgaacgtgcggtggcgcgcgactcg
ggtgtgaccgtgaacgcgcgccgtggcggcgtgatcgagcagatcgacgccggccgcatc
gtggtcaaggtcaacgaggccgagatcggcggcggcaccgatgccggcgtcgacatctac
aacctgatcaagtacacgcgctccaaccagaacacctgcatcaaccagcgtccgctggtc
aatgtgggcgacgcgatcgcgcgcggcgacgtgctcgccgatggtccctcgaccgatatc
ggcgaactggccctgggccagaacatgctgatcgcgttcatgccttggaacggttacaac
ttcgaagactccatcctgctctccgagcgtgtggtggaagaggatcgctacaccacgatc
catatcgaagagctcacctgcgtggcgcgcgacaccaagctggggccggaagaaatttcc
gccgatatccccaatgtctcggagcaggcgctcaaccgtctcgacgaatccggtgtggtg
tacatcggtgcggaagtgcgtgccggcgacatcatggtcggcaaggtcacgcccaagggc
gagagccaactgaccccggaagagaaactgctgcgcgcgatcttcggcgagaaggcctcg
gacgtgaaggatagctcgctgcgtgtgccgcctggcatggacggcaccgtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggataagcgcgcccgccagatcgaggaaaac
gagatcaagcgggtcaagaaggacttcgacgatcagttccgcatcctcgagagcgccatc
tacgcacgcctgcgcagccaactgatcggcaaggtcgccaacggcggcccgaacctgaag
aagggcgacaccatcagcgatgcctacctggatggtctgaagaagtccgagtggttcgct
ctgcgcatgaaggacgaggatgcctccgacgcgatcgagcgcgcgcagaagcagatccag
gcgcatgaacaggagttcgaacgtcgctttgccgataagcgcggcaagatcaccgctggc
gacgacctcgctccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcggcgt
atccagcccggcgacaaaatggccggtcgccacggcaacaagggtgtcgtgtcgatgatc
cagccgatcgaggacatgccgtacatggccaacggcgagaccgtggacatcgtattgaac
ccgctgggcgtgccctcgcgtatgaatatcggtcaggtgctggaagtgcaccttggctgg
gcggccaagggcctgggacgcaagatccagaacatgctcgacgctcaggccaatgtggcc
gatctgcgcaagttcctgacccagatctacaaccacgaccagaagttgggcgaggaccgc
gtggacctggatcagttcagcgacgccgagctgctgtccctgtcgaagaacctgaccgac
ggtgtgccgatggcgaccccggtgttcgacggcgcgaccgaagcggagatcaagcacatg
cttgaactcgccgatctgccgatcagcggccagacccagctttacgatggccgtaccggc
gaagcgttcgatcgccgtaccaccgtcggctacatgcacatgctgaagttgaaccacttg
gtcgacgacaagatgcacgcgcgttccactggtccgtattcgttggtcacccagcagccg
ttgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtgtgggcgttg
gaagcctacggtgcggcttacaccttgcaggaaatgttgacggtgaagtccgacgacgta
cagggccgcaaccagatgtacaagaacatcgtcgatggcgagcacgaaatggtggccggc
atgccggagtccttcaacgtgctggtgaaggaaatccgctcgctggccatcaacatggaa
ttggaagactga
DBGET
integrated database retrieval system
