Xanthomonas sp. ISO98C4: AC801_19115
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Entry
AC801_19115 CDS
T06033
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xan
Xanthomonas sp. ISO98C4
Pathway
xan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC801_19115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xan03019
]
AC801_19115
Enzymes [BR:
xan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AC801_19115
Messenger RNA biogenesis [BR:
xan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AC801_19115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AZU31915
UniProt:
A0A3Q9Q0R5
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All DBs
Position
complement(4461692..4463404)
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AA seq
570 aa
AA seq
DB search
MSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVESVTSELLTPLPRAPRVPVVGEEADEDAGDSVGTIFRE
AREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRPRRKPRVEGQAPAAAASTE
HPVAAAAAQAPSAGVADAERAPRKRRRRRNGRPVEGAEPAVASTPVPAPAAPRKPTQVVA
KPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaagccgctgaccgatgtgaccttttcctcgttcgacctgcatccggccttg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacc
ttggcgtttctggtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgc
aagccggaagacccgcgcgcgctgatcctagcgccgacccgcgagctggcgatccagatt
cacaaggacgcagtgaagttcggcgccgaccttggcctgcgctttgcgctggtctatggc
ggggtggattacgacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgcc
accccgggccgtctgatcgactacgtcaaacagcacaaggtggtctcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggtacccggcagacgttgttgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggagaagctc
gtcgtcgaaaccgaaagcatcaccgccgcgcgggtgcgccagcgcatctattttccgtcc
gacgaagagaagcagacgctactgttgggcttgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtggagcgcgtggcgcgcaccctggagcggcat
ggctaccgggtcggcgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaaaggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggt
ctgcatatcgacggcgtcaaatacgtctacaactacgacctgccattcgacgccgaagac
tacgtccatcgcatcggccgcaccgcgcgtctgggcgaggagggcgatgcgatcagcttc
gcctgcgaacgctatgcgatgagcctgccggacatcgaggcctacatcgagcagaagatt
ccggtcgagtcggtgacgtccgaactgctgacgccgctgccgcgcgcgccacgcgtgccg
gtggtaggcgaagaggccgacgaggacgctggcgacagcgtgggcacgatcttccgcgag
gcgcgcgagcagcgtgccgccgaagaacagcgtcgcggtggtgggcgcggtggcccgggc
gggtcgcgcagcggcagtggcggtggtcgccgcgatggcgccggtgccgatggcaagccg
cgtccgcgtcgcaagccacgggtggaaggccaagcgcctgcagctgcggcgtcgaccgaa
catccggtggctgcagcagcggcacaggcgccttccgcgggcgtggccgatgccgagcgc
gcaccacgcaagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgccgagccggca
gtggcatccacgccggttcccgcacctgccgcaccgcgcaagcccacccaggtggttgcc
aagccggtgcgtgccgccgccaagccgtcgggcagcccgtcgctgctcagccggatcggc
cgccgactgcgttcgctggtctccggcaactga
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