Xanthomonas sp. SS: HEP74_00551
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Entry
HEP74_00551 CDS
T09534
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xas
Xanthomonas sp. SS
Pathway
xas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP74_00551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xas03021
]
HEP74_00551
03019 Messenger RNA biogenesis [BR:
xas03019
]
HEP74_00551
Transcription machinery [BR:
xas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HEP74_00551
Messenger RNA biogenesis [BR:
xas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP74_00551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
AAA
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNH15429
UniProt:
A0A7G7SFA9
LinkDB
All DBs
Position
complement(641410..643266)
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AA seq
618 aa
AA seq
DB search
MSDNTITEPGSVDAPAEKRARKPRVSKAVSGADGGAEHGAPAQPNLPLNQAPAQSDAPRP
APQERQERQERAAPQEHAQAPSQQPQSQPAPASGGDAQGQGGGNQNDGGEPREGGNPRFN
NQNPQNQNNQNNQQGNRRDRFRNRRDRGGGGGGGGGGNGGGGNGGGRERYPDNGLPSDTG
ANEVFVPRPHANVPEGFPIYSLSDLKRMPAQKLLDIAEQLNIQDGVARARKQDVIFALLK
VLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGR
IRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGR
ILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQ
RTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPS
SGKVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGN
SEVHLNRRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLL
DKMKNTKSNDEFFGSMKR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacaccatcaccgaacccgggagcgtcgacgcccccgccgagaagcgcgcg
cgcaagccgcgtgtcagcaaggccgtgagcggcgctgacggcggagccgagcacggcgca
ccggcgcagccgaacctgccgctgaaccaggcgccggcccagtccgacgcgccgcgtccg
gcgccgcaagaacgccaggaacgccaggaacgtgccgcgccgcaggaacacgcgcaggcg
ccgtcgcagcagccccagtcccagcccgctcccgcctccggcggcgatgcccagggccag
ggcggcggcaaccagaacgacggcggcgagccgcgcgaaggcggcaacccgcgcttcaac
aaccagaatccgcagaaccagaacaaccagaacaaccagcagggcaatcgccgcgaccgc
ttccgcaatcgccgcgatcgcggtggtggcggtggcggtggtggcggcggcaatggcggc
ggaggcaatggcggtggccgcgagcggtatccggacaacggcctgcccagcgacaccggc
gccaacgaagtgttcgtgccgcgcccgcacgccaacgtgccggaaggtttcccgatctac
tcgctgagcgacctgaagcggatgccggcgcagaagctgctggacatcgccgagcagctc
aacatccaggacggcgtggcccgcgcgcgcaagcaggacgtgatcttcgcgctgctgaag
gtgctgacccgccacggcgaaggcgtcgctgccgacggcgtgctggaaatcctgccggac
ggcttcggcttcctgcgcgcggccgaggccagctacctggccggcccggacgacacctac
atctcgcccagccagatccgccgcttcaacctgcgtaccggcgaccacctgtccggccgc
atccgcttcccgaaggacggcgaacgctacttcgcgctgtcgatcgtcgacacgatcaac
ggcgagccgctggaagcgagcaagaacaaggtgctgttcgagaacctgaccgcgctgttc
ccgcgcaagcgcttcaccctggaacgcggcaacggttcctcggaagacatctccgggcgc
atcctcgatctgatggcgccgcagggcaagggccagcgcgcgctgatcgtgtccccgccc
aaggccggcaagaccatgctgatgcagcaggtggctacggctattaccaccaaccatccc
gacgtgcacatgatcgtgctgctgatcgacgagcggccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaggtcatctcctccaccttcgacgagccggccgcgcgccacgtg
caggtcgccgagatggtgatcgagcgcgccaagcgcctggtcgagcacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctggcccgcgcctacaacaacgtggtgccgtcc
tccggcaaggtgctcagcggcggcgtggacgccaatgcgctgcaccgcccgaagcgtttc
ttcggcgcggcgcgcaacgtcgaggaaggcggttcgctgaccatcatcgccacggcgctg
gtggaaaccggcagcaagatggacgaggtgatctacgaagagttcaagggcaccggcaac
agcgaagtgcacctgaaccgccgtatcgccgaaaagcgcgtgtacccggcgatcgacatc
aaccgctccggtacccgtcgcgaagacctgctgatcgagccggagctgctgcagaagatc
tggatcctgcgcaagctgctgcatccgatggacgagatcgcggcgatggagttcctgctg
gacaagatgaagaacaccaagtccaacgacgagttcttcggttcgatgaagcgctga
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