Xenorhabdus bovienii SS-2004: XBJ1_3474
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Entry
XBJ1_3474 CDS
T01186
Symbol
ddlB
Name
(GenBank) D-alanine-D-alanine ligase B, affects cell division
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo00470
D-Amino acid metabolism
xbo00550
Peptidoglycan biosynthesis
xbo01100
Metabolic pathways
xbo01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
XBJ1_3474 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
XBJ1_3474 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
XBJ1_3474 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xbo01011
]
XBJ1_3474 (ddlB)
Enzymes [BR:
xbo01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
XBJ1_3474 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xbo01011
]
Precursor biosynthesis
Amino acid ligase
XBJ1_3474 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp
ATPgrasp_ST
ATPgrasp_Ter
RimK
TTL
ATPgrasp_YheCD
Motif
Other DBs
NCBI-ProteinID:
CBJ82592
UniProt:
D3V4L3
LinkDB
All DBs
Position
complement(3382892..3383812)
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AA seq
306 aa
AA seq
DB search
MVEKVAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFI
ALHGRGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQ
KFEQVNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGALELAFQHDTDVLVE
KWLLGPEYTVAFLGDEVLPSIRIQAPEVFYDYDAKYLSNETKYFCPSGLSAEKELELAEI
ASKAYKALGCSGWGRVDIMDDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVVK
ILELAD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggttgagaaggtcgctgttctattgggcggaacctccgctgagcgggaagtttcactg
caatcaggacaatctgttgtggccgggctgaaagaagcaggcattaatgcatattcagtc
gatacaaaagactttgatgtgactaaactcaaaggagaaggattcagcaaagccttcatc
gctctgcatgggcgtggtggtgaagatggtacgctgcaaggggtactggagtttttgcaa
atcccttataccggcagtggtgttatggcatcagctttgtcaatggacaaattgcgcaca
aaacagttatggcagggagcaaagttgccggtttctccgtatgccgcaattaatgctcaa
aaatttgaacaagttaatgatttccaactccaagaatatgttcgagaattaggacttcca
ttaatggttaagccgaatctggaaggttccagtgttggtatgactaaagtgaatgattat
tccgaactgcgtggggcattggagctggcgttccagcacgacacggatgtgctggttgaa
aaatggttgttgggtcctgaatataccgtggcatttttgggcgatgaggttttaccctct
atccgtatccaagctccggaagtgttctatgactacgatgcgaaatatctttccaatgaa
acgaaatacttctgcccaagtggcctgagtgcagaaaaagagctggagttggcagagatt
gcatcaaaagcgtataaggcgctgggatgcagtggttggggtcgggttgatatcatggat
gatggcaatggtaatttctatctgttggaagtgaatacatccccaggtatgaccagccat
agcttagtaccgatggccgcacgtcagtccggactcagtttttcacagctggtggtgaaa
attctggagttggccgattga
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