Xanthomonas campestris pv. campestris 8004: XC_0109
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Entry
XC_0109 CDS
T00247
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XC_0109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_0109
Enzymes [BR:
xcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XC_0109
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XC_0109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AAY47200
UniProt:
A0A0H2X2G3
LinkDB
All DBs
Position
126994..129999
Genome browser
AA seq
1001 aa
AA seq
DB search
MSLRDYTRKRRFDQTPEPAEDAAATAHRQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRAGEKRLAVQVEDHPLAYAGFEGDIPQGQYGAGHVQVFDHGTWHCDGDALAALDA
GKLDFDLQGDKLRGGFALVRTRLRGRQPQWLLIKRDDAHAADLDADALVADSDATAQAIE
TPSAAAAPARRAKASRRRRTPAEALVTEKSASASRPRASAATQAHWRTRALALPGARDAA
CPTGLRAQLTLLRAEAPDGAQWPHEIKWDGYRLLTDLVDGRAQLRSRNDQAWTDSFPEVA
TAVQALPVRDARLDGELVVLDAQGRSDFSALQRAIDGTARQPLRYLVFDLLGVAGVDLRA
TPLLERKQLLRALLGETPGTLAYSAHVIGRGPEVFAASADKGWEGIVSKRADAPYRGGRS
ADWVKTKHEDSDEFVVVGYTDPKGARSGFGALLLAQLDGTQLRYVGRVGTGFDSALLGEI
TAQLQALHSPQPTLELPAHIPSRPRDVHWVRPVLIAEVAFRGWAKQGLLRQAAFKRLRED
KPMSDLGGDRATPGKSRGARTRTAAAAAGKASRAAATRTAAVSAGGSAAKPGKAGKSSTA
ADVSTPSRVAKQRVTPAASSAAKPGKPGKSSAAATGTASPRAAKRGAVSTASASSTPKSG
KRSVSSGSAASGKPAAPSKAASSKTARTPATSSARKTSTATAASSIRKARASASNAPDGV
AITHPERVVFPAAGISKGDVAAYYRAVAPLVLPEIARRPLSLLRCPDGAAGACFFQKHEG
RHLGAHIKAIPLKQKSGTEDYLYIEDVAGLLELVQMNTLELHPWGARVDDPEHPDRLVFD
LDPGEGVAWTQVVAAAREIRSKLRAAGLESAVRLSGGKGLHVVVPIVPQASWDQARDFCE
AFAQALATQAPERYVATMSKAKRHGVIFVDWLRNGRGNTSVCSWSLRAREHATVAVPLRW
EELGKLSGPDAFPLDKAVQRAKRQRNDPWADVLALKQVLPG
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcgcgactacactcgcaagcgccgcttcgaccagaccccggagccggccgag
gacgccgcggcgacagcgcatcggcagccgatcttcgtggtgcaactgcatcacgccagc
tcgcgccattacgattttcgcctggaagccgatggcgtgctcaagagttgggcggtgccc
aagggcccgtcgctgcgtgctggcgaaaaacgcctggcggtgcaggtggaggatcacccg
cttgcgtacgcgggcttcgaaggcgacatcccgcaagggcagtacggggcggggcacgtg
caggtattcgaccacggcacctggcactgcgatggcgacgcgttggcggcgctggatgcc
ggcaagctggactttgacctgcagggcgacaagctgcgcggtggctttgcactggtacgc
acacgcttgcgtggacgccagccgcagtggttattgatcaagcgcgacgatgcccatgcc
gccgatctggacgccgatgcgttggtagccgattccgatgccacagcgcaggcgattgag
actccatcggctgcagccgcaccggcgcgccgtgccaaggccagccgtcgtcgacgcacg
ccggccgaggcgttggtgacagaaaaatccgcatccgccagccgcccgcgtgcttccgca
gccacacaggcccactggcgcacgcgcgcactggccttgccgggcgcgcgcgatgcggcc
tgccctaccggcttgcgcgcgcagctgacgttgctgcgcgctgaggcgccggatggtgcg
cagtggccgcacgagatcaagtgggacggctaccggttgttgaccgatctggtcgatggc
cgggcgcaactgcgctcgcgcaacgatcaggcctggacggacagctttccggaagttgcc
acggccgtgcaggcgttgccggtgcgcgatgcgcgcctggatggcgaactggtggtactc
gatgcgcaaggccgcagcgatttctccgcgctgcaacgtgccatcgacggcactgcgcgc
cagccgttgcgctacctggtgttcgatctgctcggcgttgctggcgtggatctgcgcgcc
accccactgctggagcgcaagcagttgttgcgtgcgttgctcggcgaaacgccgggcacg
ctggcctatagcgcgcatgtaatcggccgcggaccggaggtgtttgccgccagtgccgac
aaaggctgggaaggcatcgtcagcaaacgcgcggacgcgccgtaccgtggcgggcgcagc
gccgattgggtcaagaccaagcacgaagacagcgacgagttcgtggtggtgggctacacc
gaccccaagggcgcgcgcagcggctttggcgccctgttgctggcacagctcgacggcacg
cagctgcgctacgtgggccgggttgggaccggtttcgatagtgcgctgctcggcgagatc
accgcgcaattgcaggcattgcacagcccgcagcccacgctggaattacccgcgcacata
cccagccggccgcgcgatgtgcactgggtgcgcccggtgttgatcgccgaggtggcgttc
cgtggctgggccaagcagggcctgctgcggcaggcggccttcaagcgtttacgcgaggac
aaaccaatgagcgatctgggcggcgaccgcgccacaccgggcaagtcgcggggagcacgc
acgcggacggctgcagctgctgcgggcaaggcatcacgtgctgcagcgacgcgcactgcg
gcggtatcggctggcggttcggctgcgaagccgggcaaggcgggcaagtcgtccactgca
gcggatgtcagcacaccgtcgcgtgtcgccaaacaacgtgtgacaccggccgccagttcc
gctgccaagccaggaaagccgggcaagtcgtccgcagcggccacgggcactgcctcgccg
cgtgcggccaaacgaggtgcggtgtctaccgccagcgcatcgtctactccgaagtcgggc
aagcgcagcgtttccagcgggtccgcagcgtccggcaagccggccgcgccgagcaaggcc
gcatcgtccaaaacggcacgcacaccagctacgtcatcggcaaggaaaacctcgacagca
acggcagcgtcatccatacggaaagcgagggcatcggcctccaacgcgccagacggcgtt
gccattacccatcctgagcgcgtggtgttccctgccgccggcatcagcaagggcgatgtg
gccgcgtattaccgcgcggtggcaccgctggtgttgccggagatcgcgcgccggccgttg
tcgttgttgcgctgccccgatggcgctgcaggtgcgtgctttttccagaagcacgaaggc
cgccatcttggcgcgcacatcaaggcgatcccgctgaagcagaagagcggcaccgaagat
tatctgtacatcgaggatgtggccgggctgctggaattggtgcagatgaacaccctggag
ctgcatccctggggcgcgcgggtggatgaccccgagcaccccgaccggctggtgttcgac
ctggatccgggcgaaggcgtggcctggacgcaggtggtagccgccgcacgcgagatccgc
agcaagttgcgtgcggccgggctcgaaagcgccgtgcgcctgtcgggtggcaagggactg
cacgtggtggtgccgatcgtgccgcaggccagctgggaccaggcacgcgatttctgcgaa
gccttcgcacaggccttggccactcaggccccggagcgctatgtggccaccatgagcaag
gccaagcgtcacggcgtgatctttgtcgactggctgcgcaacgggcgcggcaataccagc
gtgtgctcgtggtcgctacgcgcgcgcgagcacgccaccgtggcggtgccgctacgctgg
gaagaactgggcaaactcagcggcccggatgcattcccgctggacaaggccgtgcagcgc
gcaaagcgtcagcgcaatgatccctgggcggatgtgctggcgttgaagcaggtgttgcct
ggctag
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integrated database retrieval system
