Xanthomonas campestris pv. campestris 8004: XC_1808
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Entry
XC_1808 CDS
T00247
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xcb
Xanthomonas campestris pv. campestris 8004
Pathway
xcb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XC_1808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcb03400
]
XC_1808
Enzymes [BR:
xcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XC_1808
DNA repair and recombination proteins [BR:
xcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XC_1808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AAY48871
UniProt:
A0A0H2X6P6
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All DBs
Position
2195931..2198480
Genome browser
AA seq
849 aa
AA seq
DB search
MSLSEYRRKRSFDKTREPEPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDIDDAAFAPQLAKLGQAPPE
GAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQILANAPA
GHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRGGRSDDWRKTKQLASQEYAVVG
YTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEVTQHLHGGGKRPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASLKAVRLDKDIADLADSDMGDVSPAQA
DVADTPARGRKRANKQAPAQGEPTLSSPTKLIYPDIRATKGDVWDYYHAVMDHLLPEIVG
RPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRLKEETGSNAYYLVVEDAPGLLELVQFN
ALEFHPWGSHAARPDMADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLELESFLRVSGG
KGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPDRFVATATKRFRNKRIFVDYLRNGRG
ATAVASYSLRGRPGAPVALPLPWSDLAKLHRANAFTLRDVPDKLRRRRKDPWADIAQIQQ
NLARWADQG
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagtgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagcca
ggcaagttgctgccgcaagggcagcgggcgatcttcgtggtgcagctgcaccatgccagc
cggcgccactacgatttccgcttgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagctacgacccggcagtcaagcgcatggcggtagaggtggaagaccacccg
gtggactatgccagtttcgaaggcgagattccgaagggcgaatacggcggcggccacgtg
gctcagttcgatcatggggtctgggccaccgccggtgacccggaagcgcagttggccaag
ggccacctgcgcttcgagttgttcggcagcaagctcaagggcggctggcacctggtgcgc
tcgagcaagccggcccgccagccgcagtggttgctgttcaaggaggacgacgcctatgcc
ggcacgctggaagccgacgatctgctggccgatgtggctgcggcgccagcagaagatgta
cgtcgcgccggtgccggcaaggcccaacgcaaggcactcaccaccgtgcctgtgccccgg
gcgcgcgcacgtaacgcctggaccaacgccgcgttgaaactcacgcacgcgcggcgcggc
gacatcgacgatgccgcgttcgcaccgcagctggccaagctcgggcaggcgccgccggaa
ggggcgcaatgggtgcatgaaatcaagtgggacggttatcgcatcctggccacggtgacc
gatggtcaggtacggctgtggtcgcgcaatgcgctggaatggaccgacaagattcccgat
atccgcgatgcgatccaggcgctcaacctgcgctcggcacggctggatggcgagctgatc
gccgggcgtggcaccaaggaggatttcaacctgctgcaggcgaccttgtcgggcgaacgc
caggtgccgctggcgctggcggtgttcgacctgctgcacatcgatggcgtggagatcagc
gaggcgccgctgcgcgaacgcaagcagctcttgcagcagatcctggcgaatgcgccggcc
ggccatctggcctacagctcgcatgtggagggcgatgggctggaggcgttccgggtcgcc
ggcgagcagcacttcgaaggcatcatttccaagcgtgccgaccggccgtaccgcggcggt
cgcagcgatgattggcgcaagaccaagcaactggccagccaggaatacgcggtcgtcggc
tataccgcgcccaagggcagccgtaccggcttcggctcgctgctgctggccacgccggac
ccgcagcacggctggttgtatgtggggcgggttggttcgggcttttctgatacgttgatg
caggaggtgacccagcacctgcacgggggcggcaagcggcccaccgcgcatatccccacc
gaggacaccgatctgcgtggcgccacctggttcgcgccgcggttcgtggtggaggtgttc
tatcgcggcatcggggggcagcagctgttgcgccaggcctcgctcaaggcggtgcgtctg
gacaaggacatcgccgacctggccgacagcgatatgggggatgtcagtcccgcgcaggcc
gacgtggccgacactccagcacgcgggcgcaagcgtgcaaacaagcaagcgcccgcgcag
ggcgagcccacgttgtccagcccgaccaagctgatctacccggacatccgcgccaccaag
ggcgatgtctgggactactaccacgcggtgatggatcacctgctgccagagatcgtgggg
cggccgttgtcgatcatccgttgccccaatggcgcggaaaagccgtgtttcttccagaag
catcacaccgccgggctggagcgggtgagctcggtgcggttgaaggaagagaccggcagc
aatgcctactatctggtggtcgaagatgcgcccgggctgctggaactggtgcagttcaat
gcgctggaattccacccctggggctcgcatgccgcgcggccggacatggccgatcgcgtg
gtgttcgatctggatccgggcccggatgtgccatttgccgaggtcaaacgggccgccacc
gatatccgcaagctgctggcgcagctggagctggaatcgtttctgcgcgtctccggtggc
aagggcctgcacgtggtggtgcccttgaatccgggctgcgattgggagttgaccaagcgc
tttgccaaaggctttgccgacgcattggcgcaatccgagccggaccgctttgtggcgacg
gcaaccaagcgcttccgcaacaaacgcatctttgtcgattatctgcgcaacgggcgtggg
gccaccgcagtggcgtcgtactcgctgcgcggccgcccgggcgcaccggtggcattgccg
ctgccgtggtcagatttggccaagctacatcgcgccaacgccttcaccctgcgcgatgtc
ccagacaagttgcgtcgccgccgcaaggacccttgggcagacatcgcgcagattcaacag
aacctggcgcgctgggcggaccagggctga
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