Xanthomonas campestris pv. campestris ATCC 33913: XCC0888
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Entry
XCC0888 CDS
T00083
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XCC0888 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcc03021
]
XCC0888 (rpoB)
03400 DNA repair and recombination proteins [BR:
xcc03400
]
XCC0888 (rpoB)
Enzymes [BR:
xcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XCC0888 (rpoB)
Transcription machinery [BR:
xcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XCC0888 (rpoB)
DNA repair and recombination proteins [BR:
xcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XCC0888 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
AAM40198
UniProt:
Q8PC56
LinkDB
All DBs
Position
1042071..1046234
Genome browser
AA seq
1387 aa
AA seq
DB search
MEDLMTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHA
ALKSVFPISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST
KAIKYVKEQEVYLGEIPLMTENGTFIVNGTERVIFSQLHRSPGVFFDHDRGKTHSSGKLL
YSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFH
INPDEGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDD
YLVGRILSHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNT
LRIDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVG
RKEVLGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHL
GNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGS
SQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPN
IGLINSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNM
LTEQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQ
AVPTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAG
VDIYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPW
NGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDE
SGVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGT
VIDVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGG
PNLKKGDNVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEARFADKRGK
ITQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVD
IVLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQTAVSELRKFLDDIYNHDSAI
NAERVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQLYD
GRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLA
INMELEE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
gtggaagacctcatgacgtcttattcgttcaccgaaaagaagcgtatccgcaaggacttc
ggcaagcagcgctcgattctcgaagtgccgttcctgcttgccatccaggtggattcctac
cgcgaattcctgcaggaagacgtggagcccaacaagcgcaaggacctcggtctgcacgcg
gctctgaagtcggtgttcccgatttccagctacagcggcaacgccgcgctggaatacgtt
ggttacaagttgggcgagcccgtgtttgacgagcgtgaatgccgtcagcgcggcatgagc
tatggcgcgccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgacc
aaggccatcaagtacgtgaaggagcaggaggtctatctcggcgaaattccgctgatgacc
gaaaacggcaccttcatcgtcaacggtaccgagcgcgtgatcttctcgcagctgcaccgt
tcgccgggtgtgttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctg
tacagcgcccgcatcattccgtaccgcggttcctggctggacttcgagttcgacccgaag
gatgcgctgttcacccgtatcgaccgtcgccgcaagctgccggtctcgatcctgctgcgt
gcgcttggctacaacaacgaagagatgttggccgagttcttcgagatcaacacgttccac
atcaatcccgatgaaggcgtgcagctggagctggtgccggagcgtctgcgtggcgaaacg
ctgaacttcgacctggccgatggcgacaaggtcatcgtggaagccggcaagcgcatcacc
gcgcgtcacgtcaagcagctggaagccgccggcgttgccgcgctggccgtgccggacgac
tacctggtcggccgcatcctgtcgcacgacgtggtcgatggctcgaccggcgagctgctg
gccaatgccaacgacgaaatcagcgaagaccagctggctgcgttccgcaaggccggcgtc
gatgccgtgggcaccttgtgggtgaacgacctggatcgtggcccgtacctgtccaacacc
ttgcgtatcgacccgaccaagacgcagctggaagcgctggtcgagatctaccgcatgatg
cgtccgggcgagccgccgaccaaggaagctgcgcagaacctgttccacaatctgttcttc
accttcgagcgctatgacctgtccacggtcggccggatgaagttcaaccgccgtgtcggc
cgcaaggaagtgctgggcgagtcggtgctgtacgacaagaagtactttgccgagcgtaac
gacgaagaatccaagcgtctggtcgccgagcacgccgacacctccgacatcctggaagtg
atcaaggtgctgaccgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctg
ggcaaccgtcgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctg
gtccgcgtcgagcgcgcggtcaaggagcgtctgtcgatggcggagtcggaaggtctgacc
ccgcaggaactgatcaacgccaagccagtggctgctgcgatcaaggagttcttcggctcc
tcgcagctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgt
cgcgtctccgcgctgggcccgggcggtctgacccgcgagcgcgccggcttcgaagtgcgc
gacgtgcatccgacccattacggccgcgtctgcaccatcgaaacaccggaaggcccgaac
atcggcctgatcaactcgctggccgtgttcgcccgcaccaaccagtacggcttccttgag
acgccgtaccgtaaggtgctggacggcaaggtctccgacgacgtcgagtacctgtcggcg
atcgaagaaaacgagtacgtgatcgcacaggcgaatgcgctgaccgacgccaagaacatg
ctcaccgagcagttcgtgccgtgccggttccagggcgagtcgctgctcaagccgccggct
gaagtgcacttcatggacgtctcgccgatgcagaccgtgtcggtcgccgcggcgttggtg
ccgttcctggagcacgatgacgcgaaccgcgcactgatgggcgccaacatgcagcgccag
gccgtgccgaccctgcgttcgcagaagccgctggtgggtaccggtatcgagcgtgcggtt
gcgcgcgactcgggcgtgaccgtgaatgcccgccgtggtggtgtgatcgaacagatcgac
gccgcacgcatcgtggtcaaggtcaacgaggcagaaattggcggcggcaccgatgccggc
gtggatatctacaacctgatcaagtacacccgctccaaccagaacacctgcatcaaccag
cgtccgctggtgaacgtgggtgacgtgatcgcgcgcggcgacgtgctggccgacggcccg
tccaccgacatcggtgaactggcgctgggtcagaacatgctgatcgccttcatgccctgg
aacggctacaacttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgt
tacaccacgatccacatcgaagaactgacctgcgttgcgcgtgacaccaagctggggccg
gaggaaatttccgccgacatcccgaacgtgtccgagcaggcgttgaaccgtctggatgaa
agcggcgttgtgtacatcggtgcagaagtgcgcgccggcgacatcatggtcggcaaggtc
acgccgaagggcgagagccagctgaccccggaagaaaagctgctgcgtgcgatcttcggt
gagaaggcctccgacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcacc
gtcatcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgtgcgcgccag
atcgaggaatccgagatcaagcgcgtcaagaaggacttcgacgaccagtttcgcatcctt
gaagcggccatctacgcacggttgaggtcccagatcgtgggcaaagtcgccaatggcggt
ccgaacctgaagaagggcgacaacgtcaccgacgcgtacctggacggcctgaagaagtcc
gactggttccagctgcgcatgaaggacgacgacgcagccgatgcgatcgaacgcgcgcag
aagcagatccaggcgcacgagaaggaattcgaagcacgcttcgccgacaagcgcggcaag
atcacccagggcgatgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggcg
gtgaagcgccgcatccagccgggcgacaagatggcaggccgccacggcaacaagggtgtg
gtctccaacgtcgtgcctgtcgaagacatgccgtacatggccaccggtgagccggtcgac
atcgtgctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctggaagtg
catctgggctgggcagccaagggcctgggtcgcaagatccagcgcatgctggaagcccag
accgcggtcagcgagctgcgcaagttccttgatgacatctacaaccacgacagcgcgatc
aatgccgagcgcgtggacctgtcgcagttcagcgatgaggaattgctcaacctgggcaag
aacctgatcgatggcgtgccgatggccaccccggtgttcgacggtgccagcgaagcggaa
atcaagcgcatgctggaactggccgaactgccgcagagcggtcagacccagctgtacgac
ggtcgtacaggcgaagcgttcgatcgcaagaccacggttggctacatgcattacctgaag
ttgaaccacttggtcgacgacaagatgcatgcccgctcgaccggcccgtactcgctcgtt
acccagcagccgctgggcggcaaggcgcagttcggtggtcagcgcttcggtgagatggaa
gtctgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaag
tccgacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgag
atggtcgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcg
atcaacatggaactggaagagtga
DBGET
integrated database retrieval system
