Xylanimonas cellulosilytica: Xcel_2233
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Entry
Xcel_2233 CDS
T01135
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xce
Xylanimonas cellulosilytica
Pathway
xce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Xcel_2233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xce03400
]
Xcel_2233
Enzymes [BR:
xce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Xcel_2233
DNA repair and recombination proteins [BR:
xce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Xcel_2233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACZ31251
UniProt:
D1BV12
LinkDB
All DBs
Position
2411221..2413797
Genome browser
AA seq
858 aa
AA seq
DB search
MGAPTTVTVDGHRLQLTNLDKVLYPATGTTKGEVIDYLARIAPVLLPHARRRPATRKRWP
DGVEGQVFFQKNADRSTPSWVRTHRIQHKTSANDYVLVDDVATLTWLGQTASLELHVPQW
QVGRTGTHLPPDRLVLDLDPGEGAGLPECAEVARLARAILQGMGLEPLPVTSGSKGIHLY
AALSAGSSPEGAKPSSAEQITDVAHELARYLEAEHPDLVVSDMKKSLRGGKVLVDWSQNN
GAKTTIAPYSLRGRTRPTVAAPRTWAELDDPDLRQLSYEEVLDRVARDGDLLAGLTAGHL
SQLEPTPAHLARFERLATYNAKRDPARTPEPFDTAPPAPVVEPVETTPPVGGVSTGSTTG
VGSTIGVGSTTGVGAPTFVIQEHHARRLHWDFRLERDGVLVSWALPKGEPTDPGTNHLAV
QTEDHPLAYGGFEGTIPNGEYGAGEVTIWDSGTYETEKWRDGKEVIAVLHSERRGTRRLA
LIRTGRAEGDNQWLIHRTKAQPAEDVASPAPVVEPVETTTPTRSTAEVAVRLEPMLASAA
QPAEVRALEADGESGSHDWVFEMKWDGYRTLAVVEPGPDGTRAIRLTSRTGQDFTRTYPE
LAPLAAQVTGELPVVLDAEIVALDAAGRPDFRRLQQHAGNVELMVFDVLQVGDRSLLHTP
YDERRTVLADVLDARRPVHLPAAFDGDLTAALETSRRLRLEGVMAKRRESTYQPGRRTRQ
WLKLKHTAVQEVVVVGWRPLRAGETDEDPRYAGGLLLAVPADDGALRYVGRVGTGFSDAE
RRDVATRLAAVERKTPPLDGVPRPDAAHTRWVTPRLVGEVEFAEWTGDPTDDPEARLRAA
RWRGWRPDKEPADVVVEP
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcaccgacgacggtcaccgtggacgggcaccgcctccagctcacgaacctggac
aaggtgctctatccggccacgggcaccaccaagggcgaggtgatcgactatctcgcccgg
atcgcacccgtcctgctcccccacgcccggcggcgtcccgcgacgcgcaagcggtggccc
gacggcgtcgagggccaggtgttcttccagaagaacgccgaccgctccacgccgtcgtgg
gtgcgcacgcaccgcatccagcacaagacgtcggccaacgactacgtgctggtcgacgac
gtcgccacgctcacctggctggggcagacggcgtcgctcgagctgcacgtgccgcagtgg
caggtcgggcgcaccggcacccacctgccgccggaccggctggtgctcgacctggacccc
ggcgagggcgcgggcctgcccgagtgcgcggaggtcgcgcggctggcccgggcgatcctc
caggggatggggctggagccgctgccggtgacctccgggtcgaagggcatccacctgtac
gccgcactgtccgccgggtcctcccccgagggggcgaagccgtcctccgcggagcagatc
accgacgtcgcgcacgagctcgcccggtacctggaggccgagcaccccgacctggtggtc
agcgacatgaagaagtcgctgcgcggcggcaaggtgctcgtggactggtcgcagaacaac
ggggcgaagacgacgatcgcgccctactcgctgcgcgggcgcacccgtcccacggtcgcg
gcaccgcgcacctgggcggagctcgacgacccggacctgcggcagctctcgtacgaggag
gtgctggaccgggtggcccgcgacggcgacctgctggccgggctgacggcgggtcacctg
tcccagctcgagccgaccccggcgcacctggcccggttcgagcgcctggccacctacaac
gccaagcgggaccccgccaggaccccggaacccttcgacaccgccccacccgctccggtg
gttgagcctgtcgaaaccacgccaccggtgggaggggtttcgacaggctcaaccaccggg
gtgggctcaaccatcggggtgggctcgaccaccggggtgggcgcgcccaccttcgtgatc
caggagcaccacgcccgccgcctgcactgggacttccgcctcgagcgcgacggggtgctg
gtgagctgggcgctgcccaagggcgagccgaccgaccccggcacgaaccacctggccgtg
cagaccgaggaccacccgctcgcgtacggcggcttcgagggcaccatcccgaacggcgag
tacggggcgggcgaggtgaccatctgggactccggcacgtacgagaccgagaagtggcgc
gacggcaaggaggtcatcgccgtcctgcacagcgagcgccgcggcacccgccgcctcgca
ctgatccgcacgggccgcgcggagggcgacaaccagtggctgatccaccgcacgaaggcc
cagcccgccgaggacgtggcttcgccggccccggtggttgagcctgtcgaaaccaccacc
ccgacccgctcgaccgccgaggtcgcggtccggctcgaacccatgctcgcctccgccgcc
cagccggccgaggtccgcgccctggaggccgacggggagtcgggcagccacgactgggtg
ttcgagatgaagtgggacggctaccgcaccctcgccgtcgtcgaacccggccccgacggc
acgcgcgccatccgtctcacctcccgcacgggacaggacttcacgcgcacctacccggag
ctggcgccgctcgccgcgcaggtcaccggcgagctgccggtggtcctggacgccgagatc
gtcgccctcgacgccgcaggccgccccgacttccgccggctgcagcagcacgcgggcaac
gtcgagctcatggtcttcgacgtgctccaggtgggcgaccggtccctgctgcacaccccg
tacgacgagcgccgaaccgtgctggccgacgtcctcgacgcacgacgtccggtccacctg
cccgccgcgttcgacggcgacctgaccgccgcgctggagacctcgcgacgcctgcgcctc
gagggcgtcatggccaagcgccgtgagtcgacctaccagccgggccgccggacgcggcag
tggctcaagctcaagcacaccgccgtccaggaggtggtcgtcgtcgggtggcgtccgctg
cgcgcgggagaaaccgacgaggacccgcggtatgcgggcggcctgctgctcgccgtaccc
gccgacgacggcgccctgcgctacgtgggccgcgtcgggacggggttcagcgacgccgaa
cgccgcgacgtcgccacccgcctcgccgccgtcgaacgcaagacgccgccgctcgacggc
gtcccccggcccgacgccgctcacacccgctgggtcaccccgcggctggtcggcgaggtg
gagttcgcggaatggaccggcgacccgaccgacgaccccgaggcccggttgcgcgccgcc
cgctggcgcggctggcgcccggacaaggagcccgccgacgtcgtcgtcgaaccctga
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