Xanthomonas citri subsp. citri Aw12879: XCAW_04707
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Entry
XCAW_04707 CDS
T02519
Symbol
recD
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XCAW_04707 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xci03400
]
XCAW_04707 (recD)
Enzymes [BR:
xci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XCAW_04707 (recD)
DNA repair and recombination proteins [BR:
xci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XCAW_04707 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
AAA_22
Helicase_RecD
UvrD_C
RecD_N
nSTAND3
T2SSE
AAA_16
DEAD
AAA_28
SLFN-g3_helicase
Rad17
Terminase_6N
ATPase
Phageshock_PspD
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AGI10465
LinkDB
All DBs
Position
complement(5269832..5271889)
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AA seq
685 aa
AA seq
DB search
MSLLADLQAKSHLRTLDHAFAQSLRRLRPDTPDTVLLAAALASLAVANGHAGLDPRRPRL
LVDADVAWPAADAWMAQLQASPWIAQPDDPLAAAASDAPLVLEHGLLYLRRYREYEARLA
AGLTRIASDTLPATESAVLAAVFAALFPSATTGQDRQAQAAALALRRALLLITGGPGTGK
TTTIARLLLLRLAQAHAAGQPPPRIALAAPTGRAAERMAESLRIALARAIEQGLPAEHQG
ASPLPPAGEGARRAGEGTAPTDFSWHSALPTGASTLHRLLGVIPDSPHFRHDADNPLPFD
LIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEAGDVLAAILRAAGPGDTLP
PDDARALQPLLGNAPVTAPAASTPVGHLAGHRVHLLRGYRQAADFALAPLADAVRIGDAE
TALSLLRSGTLPGVHFHEDGDDPLSLGREALLAHWQALTATNDPADALRQAGRLRLLTAV
RAGPQGARGLNARIEQLLAESGSGARRLGAASPWFHGRLLLITENSYRHGLFNGDVGICL
RSEASPASVRDPQAALVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWL
QLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRSALARHAARISGLAWRLGAEQMQP
TADAASPLRATTPTALGNPIQGSLF
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctcgccgatctgcaggccaagagccatctgcgcacgctcgaccacgcgttc
gcgcagagcctacgtcggttgcgtccggacacgcccgataccgtgctgctggccgctgcg
ctggcctcgctggccgtggccaatggccatgccggcctcgatccccgccgcccacggctg
ctggtcgatgcagacgtcgcctggccggcggccgacgcctggatggcccaactgcaggcc
tcgccgtggatcgcccaacccgacgatccgctggctgctgcggccagcgacgcacccctc
gtccttgagcacggcctgctctacttacgccgctatcgcgaatacgaagcccgcctggcc
gccgggttgacccgcatcgcgtcagacacgttgccagcgaccgagagtgctgtcctcgct
gcggtgtttgctgcgctgtttcccagcgcgaccaccggccaggatcgccaggcccaggcc
gccgcgctggcgctgcgccgcgccctgctgctgattaccggcggccccggcaccggcaag
accaccaccatcgcccgtctgctgctgctgcgtctcgcccaggctcatgccgccggccaa
ccgcccccccgcatcgcgctggccgcgcccaccggccgcgctgccgagcgcatggccgaa
agcctgcgcatcgcgctggcgcgcgcgatcgagcagggcttgcccgcagaacatcaaggc
gcgtcccctctcccgcctgcgggagagggtgcccgcagggcgggtgagggcaccgctcct
accgacttctcctggcacagcgccctgcccaccggcgccagcaccttgcatcgcctgctg
ggcgtgattccggattccccgcacttccgccacgacgccgacaacccgctgccgttcgac
ctgatcgtcgtcgacgaagcgtccatggtcgacctgccgctgatgtgcaagctggtcgat
gcggtggccgatggcacccaattgatcctgcttggcgatgccgaccaactgccctcggtg
gaagccggcgacgtactcgccgccatcctgcgggccgccggtcccggcgacacgctgccg
ccggacgatgcgcgcgcgctgcaacccttgttgggcaacgcgccggtgaccgccccagcc
gccagcacacccgtcggtcacctcgccggccaccgcgtgcacttactacgcggctaccgc
caggccgccgacttcgccctggcgccgctggccgatgccgttcgcattggcgatgccgag
accgcactgtcgctactgcgcagcggcacgctgccaggcgtgcacttccacgaagacggc
gatgacccattgagcctgggccgtgaggccttgctcgctcactggcaggcgctgaccgcg
accaacgatccggccgatgccctgcgccaggccggccgcctgcgcttgctcaccgcggtg
cgcgccggcccgcaaggcgcgcgcggcctcaacgcccgtatcgaacaactgttggccgaa
agtggctccggtgcccgccgcctcggtgcggcctcgccctggtttcacggccgcctgctg
ctgatcaccgaaaacagctatcgccatggcctgtttaacggtgacgtcggcatctgtctg
cgcagcgaagccagtcccgcctcggtgcgcgacccgcaagccgccctggtcgcctggttc
gaaggcgacggcgacggccaggtgcgcggcttccaccccgccgcactgcccgcacacgaa
agcgccttcgccatgaccgtgcacaaggcccaaggcagcgaattcgacgaggtctggctg
caactgcccacccgcgatgcccgcgtactcagccgcgaactgctctacaccggcatcacc
cgcgcccgccgcgccctgcacctggccggcagcgaagcggtcatccgtagcgcactggca
cgccacgccgcacgcatctcgggattggcatggcggctgggtgcggagcagatgcaaccc
actgcggatgctgcatcacctttgcgagcaacaacgccaaccgcattgggcaatcccatc
cagggctctctattctga
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