Xiphophorus couchianus (Monterrey platyfish): 114134101
Help
Entry
114134101 CDS
T05908
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xco03036
]
114134101 (dicer1)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114134101 (dicer1)
microRNA pathway
RISC loading complex
114134101 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
114134101
NCBI-ProteinID:
XP_027856205
LinkDB
All DBs
Position
19:complement(17884121..17906463)
Genome browser
AA seq
1860 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGSYQENAKRTVFLVNSVSSVIQQAAAVRTHSDLQVGEYSDWKEA
SAWSDQRWSQEISTNQVLVMTCHIFLHALRSQILPLSKINLVVFDDCHLAITEHPYCDIM
KLFEECTCGPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYTSQP
REVVLDCGPYVDRSGLSSRLQAELDEALLFLNDCNIPFSREDRDPTFISKQILSDCRAVL
LVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTTLRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPLERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
ETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKSFEEDLTTYKAIEKILRNKCSKSVEAGEFEADQSLDDDNL
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETGDGRFQSTLFLP
INSPLRVPVKGPIMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETNVPGRPGSTKRRQCYPKAIPECLQDSYALPEQTYFLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKSIPRIPHFPVYTRSGEVTISIELQKSGFTLSSAQLDLITRMH
QYIFSHILRLEKPALEFKPMLADSAYCVLPLNVVGDSDTLDMDFMFMEDIEKSEARTGIP
TTKYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATKAGVGVQTLPPDFR
YPNLDFGWKRSIDIKTFCPCPESCSEEDDCKHQNLTFLALPSSHQGPLPAPAEGPCTGNL
TNGTTVTDDSHRDEHLHQHDSCQGCGSSSEWKHDATSVPAQTPLSSSPPQPSHECTSGRT
SHHSNEATSDCTRTAPSPDLTAGPRAADSPRNLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYVVNQDKSSSDRVDSEEAREELVSNGRSGNDFDDEDRDDEGEDVDEDELMLKD
EPKDDVNMEDDLEYYKEHIRFIDNMLLGSGAFGKKISISGFGPPLSPAPGSSPSMDSSYD
WKAPKKPAQHSEQAHGGSAAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTE
LGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVQRGSH
TALLVPAVLTPAVELMYGWLKIPPRCMLDHPDAERTLQHLISGFENFERKINYTFQNKAY
LLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN
TIFASLAVKYDYHKFFKAISPELFHVIDDFVQFQLEKDEMQGMDSELRRSEEDEEKEEDI
EVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEP
ETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQTN
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtcacccctgctacttcacccatggggcccttctttggtctg
ccgtggcagcaggaggccatccatgacaacatttacacgcccaggaaatatcaggtcgaa
cttctcgaagcagctcttgaacgcaacactatcgtctgcttgaacacggactcagggaag
acctttattgcagtactcctaactaaagagctctcccaccaaatccgagggagctaccag
gaaaatgccaaaaggacagttttcctggtgaattcagtgtcgtctgtaattcaacaagcg
gctgcagtcagaactcactcggacctccaggtgggggaatactcagactggaaggaggcg
tcagcttggtcggatcagagatggagtcaggagatatccacaaatcaggtcctggtgatg
acatgccacatcttccttcatgctctgaggagtcagatcttacctctgtctaaaatcaac
ctggtggtgttcgatgattgtcacctggcgatcacagagcacccttactgtgacatcatg
aagctgtttgaggaatgcacttgtggaccacgaatactgggcctcactgcttccatcctc
aatgggaagtgtgacccatccgaactggagcagaagatccagaatctagagagaatcctg
aaaagcaatgctgaaacggcgactgacctggtggtcctcgacaggtacacgtctcagccg
agggaagtggtgctggactgcggtccctacgtggacaggagcggcctttcatcccgtttg
caggcggagctggatgaagctctcctcttcctcaacgactgcaacatcccgttttccaga
gaggacagagatcccacattcatctccaaacagatcctgagcgattgccgggccgtgttg
ctggttctgggtccttggtgtgcagacaaggctgcaggtattatggtgcgagagctgcag
aagtacatcaaacacgaacaggaggagctcaacagaaagttcctgctcttcaccgacacc
accctgaggaaggtgcacgctctgtgcgaggagcacttctcccccgcctccctggacctc
aagttcgtcacgccgaaggtgctgcgcttgcttgagatcctgcatgagtacaagccgctg
gagcgccagcagtttgagagtgtggagtggtacaacaaccgcaaccaggacaattacgtg
tcgtggagtgactcagaggatgaggacgaggacgaggaggtggaggccaaagagaggcca
gagaccaactttccctccccgttcaccaacatcctttgtgggatcatcttcgtggagcgg
cgctacacagctgtggttctgaaccgtctaatcaaagaggcagggaagcaggacccggag
ctggcttacatcagcagcaacttcatcaccggccacagcatcgggaagaaccagccgagg
aacaagcagatggaggtggagttcaggaagcaggaggaggttctcagaaagttcagagct
cacgaaaccaacctgctgatcgccaccagcatcgtagaggaaggcgtggatattccaaag
tgcaaccttgtggtccgcttcgacctgcctacagagtacaggtcctacgtccagtccaag
ggccgagcccgggcccccgtctccaattacatcatgctggccgattctgagaggacaaag
agcttcgaagaggatctaaccacctacaaggccatcgagaagatcctgaggaataaatgc
tccaagtcggtggaggcgggggagtttgaggcagaccagagtctggacgacgataacctc
ctccctccatatgtcctgcggtctgaagacgggggcccacgggtcaccatcaacacggcc
atcggacacatcaacaggtattgcgctcggctgcccagtgacccgttcacacacctcgct
cccaaatgtaaaactgtggagacgggcgatggacgcttccagtccaccctcttcttaccc
ataaactctcctctgagagtccccgtcaagggtcccatcatgaactgcgcccggctggct
gagaaagctgttgcactgctctgctgtgaaaaactccataaaataggtgagttggacgac
cacctgatgcctgttggtaaagagacggtgaagtacgaggaggagctggaccttcatgat
gaggaggagaccaacgtcccgggtcgacctggctccaccaagaggaggcagtgctaccct
aaagccatacccgagtgtctgcaggacagctatgccctgccggagcagacctacttccta
tatgtgattgggatggtccttaccacgccactccccgatgagctgaacttccgcaggaga
aagctgtacccccctgaggacacgactcggtgcttcggcatcctgactgccaaatccata
cctcgaattcctcatttcccggtgtacacccgctctggtgaggtgaccatctccatcgag
ctgcagaagtcgggtttcacgctcagctcagcccagctggacctcatcacccgcatgcat
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaaacccatg
ctggctgactcagcttattgcgttctacctctgaatgttgttggagactctgacactctg
gatatggactttatgttcatggaggacattgagaagtctgaggcccgaacaggcattcct
accactaagtacaccaagcagaaccccttcaccttcaagctggaggactaccaagatgct
gtgatcattccaaggtatcgtaactttgaccagccacatcgtttctacgtcgctgacgtc
tacaccgacctgacgccgctcagcaagttcccatcgccggagtacgagaccttcgccgag
tattacaaaacaaaatacaacctggacctgtccaacctgaaccagccgctgctggatgtc
gaccacacctcgtccagactcaacctgttgactccccgacacctgaaccagaaagggaag
gctttgccactaagcagcgcagagaagaggaaggccaagtgggagagcctgcagaacaaa
cagattctggttccggagctgtgtgccatccatcccattcccgcctccctgtggaggaaa
gccgtgtgtctgcccagcatcctgtaccgcctccactgcctgctgacggccgaggagctg
cgagcccagactgccaccaaagctggagttggggttcagaccctccccccggacttcagg
tatccaaacctggactttggctggaagagatccattgacataaaaacattctgcccttgt
cccgaatcctgcagtgaagaagatgattgtaagcaccaaaatctcaccttcttagcactt
cccagcagtcaccaggggcccctcccggcccctgcagaggggccctgcacagggaaccta
acaaacggcactaccgtaacggacgacagccacagagacgagcaccttcaccaacatgac
agttgccaaggctgcggcagcagctctgaatggaaacacgacgctacctcagttcctgcg
cagacgcccctcagctccagtcctcctcagcccagccatgaatgtacctcagggaggacc
tcacaccacagtaatgaagctacctcagactgcactcgtacagcaccttcccctgacctc
acagccgggccccgggctgcggactcgcccaggaacctgggccccaaccccggcctcatc
cttcaggccttgactctgtccaacgccagcgacggcttcaacctggagcggcttgagatg
ctcggcgactcctttctgaagcacgccatcaccacctatctgttctgcacctaccccgac
gcacacgaagggaggctcagctacatgcgcagcaagaaggtgagcaactgtaacctgtac
cgtctggggaagaagaaagggcttcccagccgaatggtggtgtccatctttgaccctccg
gtcaactggttgccgcctggatacgtggtgaaccaggacaagagcagctcggacagagtg
gactctgaggaggcgagagaggagctggtgtccaacgggcgatctgggaacgactttgat
gacgaggacagggacgacgagggtgaagacgtggacgaagacgagctgatgctgaaggac
gaaccgaaggatgacgtcaacatggaggacgacttggaatactacaaggagcacatccgt
ttcatcgacaacatgctgctggggtccggtgcgtttgggaagaagatctccatcagcggc
ttcggcccaccgctcagcccggctccaggctcctccccctccatggactcctcctatgat
tggaaggcccccaagaagcccgcccagcactctgaacaggcgcacggcggctcggcggcc
gaggagttcgactacagctcgtgggacgccatgtgctacctggaccccagcaaggcgggc
gaggaggacgactttgtggtgggattctggaacccgtcggaggagaactgcggcaccgag
ctcgggaagcagtccatctcctacgacctgcacacggagcagtgcatcgcagacaagagc
atcgccgactgtgtggaggctctgctgggctgctacctgaccagctgtggggagcgggcc
gcccagatgttcctctgctcgctgggtctcaaggtgctgccggtgcagagggggtctcac
acagcgctgctggtaccggccgttctgactccagccgtggagctgatgtacggctggctg
aagatcccgccccgctgcatgttggaccatcctgacgcagagcgcacgctccagcacctc
atctcggggttcgagaactttgagaggaaaatcaactacacgtttcagaacaaggcttac
ctgctgcaggccttcacccacgcctcctaccattacaacaccatcacagattgctaccag
cggctggagtttcttggcgacgcgatcttagactacctcataacgaagcacctttacgaa
gaccctcggcagcattcgcctggcgtgctgacggacctgcgctcggcgctagtcaacaac
accatcttcgcctcgctcgctgttaaatacgactaccacaaattcttcaaggccatctct
ccagagctgttccacgtcatcgacgactttgtgcagtttcagctggagaaggacgagatg
cagggcatggactctgagctgcgacgctccgaagaagacgaagagaaggaagaggacatc
gaggtgcccaaggccatgggggacatctttgagtccctggctggagccatctacatggac
agcaggatgtccctggagacggtgtggcaggtctactatccaatgatgaggcctctcatc
gagaaattctccgccaacgttcctcgctctccagtccgggaactcctggagatggaacca
gaaactgccaagtttagcccagcggagcgtacctacgacgggaaggtgcgtgtgacggtg
gaagttgtcgggaaggggaagttcaaaggagtcggccgcagctaccggatcgccaagtcg
gcggcggcccgccgagctctgcgcagcctcaaagccaatcaacctcaggtccagaccaac
tga
DBGET
integrated database retrieval system
