Xiphophorus couchianus (Monterrey platyfish): 114141072
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Entry
114141072 CDS
T05908
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04010
MAPK signaling pathway
xco04020
Calcium signaling pathway
xco04260
Cardiac muscle contraction
xco04261
Adrenergic signaling in cardiomyocytes
xco04270
Vascular smooth muscle contraction
xco04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114141072
04020 Calcium signaling pathway
114141072
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
114141072
09153 Circulatory system
04260 Cardiac muscle contraction
114141072
04261 Adrenergic signaling in cardiomyocytes
114141072
04270 Vascular smooth muscle contraction
114141072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xco04040
]
114141072
Ion channels [BR:
xco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
114141072
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
114141072
NCBI-ProteinID:
XP_027867277
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All DBs
Position
24:5660843..5689239
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AA seq
2048 aa
AA seq
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MYEENGRGSARNGYATTEDGEEGGGEEEADGGGGSGGGRDEEEEAEWDEELDGGDEGGVR
MTRTDTLHSTTSSTGTQRRRGQHAKKQVQGSNQVQRAPRALFCLKLNNPIRRAALHIVEW
KPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLIIFTIETFLKILAYGL
VMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSSGEQATTHHMPGKPGGLDVKALRA
FRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHRTC
YYIRTDNYVEDEPVPCAFAGHGRQCTVNGSECRGRWDGPNGGITNFDNFFFAMLTVFQCI
TMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGD
FQKLREKQQMEEDLCGYMDWITQAEDMDELDEDGNPRPSLGDLSDKKRKFGWFSHSNDTH
ASLPASETASENTENIDEEHTNCCQACCASVMKISCCQTLRRWNRVCRRNCRTAVKSVTF
YWLVLLLVFLNTSLSASEHYNQPDWLTQVQDIANKVLLSLFTVEMLLKMYSLGLAHYFVA
FFNRFDCFVVCGGIIETILVELEIMPPLGIAVLRCVRLLRIFKVTRHWTALSNLVASLLN
SMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQILTGE
DWNVVMYDGIMAYGGPVFPGMIVCIYFVILFICGNYILLNVFLAIAVDNLAGGDGDDKKK
EKKTEGEGEEEAEGEVKVDIDEDTEYEEEEELPEGEDDGGVQLKMADLAPPKEKVLPIPE
GSAFFCLSKTNPIRVACHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAHSFRNNILGYA
DYAFTSIFTVEILLKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSAISVVKI
LRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFY
RCTDEAKSTPEQCKGTFVVYKDGDVSHPMVRERIWLNSDFNFDNVLMGMMALFTVSTFEG
WPALLYKAIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGEQE
YKNCELDKNQRQCVEYALKAQPLKLYIPKNPVQYKFWSIINSTGFEYVMFVLILLNTVTL
AVQHYEQSKTFSYVMDILNMVFTGLFTAEMLLKLLALRLRHYFVDAWNSFDALIVVGSVV
DIVVTEFSSGEDSSRVSITFFRLFRVMRLVKLLNKGEGIRTLLWTFIKSLQALPYVALLI
AMIFFIYAVIGMQTFGKIAMQDYTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLASLP
GKRCDPESDYEPGEEFSCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSIL
GPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNMP
LNADGMVTFNATLFALVRTALKIKTEGSPEQENEELRAIIKKIWKRMKPKLLDEVIPPHE
EEEVTVGKFYATFLIQDYFRKFRKRKEKGNVTGESDSTNPSAVQLCKAGLKTLQDLGPEM
RLALNEDLEDEEEALMDGDDLEKNAAYKAENGFGPETRRGSMLTPTGDGGVSNGGLIHRV
GSLSMMANGNEHDEHLRRGDSVRSSVSHLRRPSVQNSLTDSAHKRPSYYKYGRRDSRDRS
WRNGDVDVYGEQGYHSREEDNESISSRDRHYPDDSSLYRDHRDSHAPYSNGSYGDSYSEG
RRTTRRRLLPATPTGRKPSFNIQCLRRQGSSDDLPIPGTYHPTSPPRRARPQVFSSYDSR
RLSTRSAAVSSASWAKSCPRRGRLLYAPLILVEEEGSPPWGGEGKNGGAARGAADGPPWF
SGSAGSSAPPPYRAYTTLRVPSQLGAPFAEKRGSADSLVEAVLISEGLGLYARDPKFVAF
AKREIADACHMTVDEMESAASDLLSSGSHDFLNTIGDDPAALYSDEEPIRTSREEEELAD
EMACVTSF
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaggagaacggcagagggagcgctcgcaacggctacgccacgacggaggatgga
gaggaggggggcggagaggaggaggcggatggagggggaggaagtggaggaggaagagac
gaggaagaggaagcagagtgggacgaggagctggacggaggagatgaaggtggagtgagg
atgacgagaaccgacacgcttcactccaccacgagctccactggaacgcagagaagaaga
ggacaacacgccaagaaacaggtgcagggcagcaaccaggtccagcgggcccccagagcg
ttgttctgtctgaagctcaacaacccgatccgacgtgccgcacttcacatcgtcgagtgg
aaaccgttcgatatctttatcctgttagccatctttgctaactgcgtagctctgggagtt
tccaaaccgtttcctgaagatgactccaactccaccaaccacgacctggaacaagtggag
tacgtcttcctcataatcttcaccatagaaactttcctgaagatcctggcctacggtctg
gtgatgcacccaagctcctacatccgcaacggctggaacctgctggacttcgtcatcgtc
attgttgggttattcagcgttgtcctggagacgatgactcataagtcaagtggcgagcag
gcaaccactcaccacatgccagggaagccgggaggtctggacgtcaaagctctgagagcc
ttcagggtgctgcgacccctcaggctggtctctggagtccccagtctgcagatcgtcctg
aactccatcatgaaggcaatggttcctctgctacacatcgctctattggttctcttcgtc
atcatcatctacgccatcattggcttggaacttttcatcggacgaatgcacaggacctgc
tattacatcaggacagataactatgtggaggatgagccggtgccgtgtgcgttcgccgga
catggccgccagtgcactgtgaacggctctgagtgtcggggccggtgggacggtcccaat
ggtggaatcaccaactttgataacttcttctttgccatgttgacggtgtttcagtgcatc
accatggagggatggaccgatgtgctgtactggatgaacgacgccattggctttgagctg
ccctgggtatatttcgtcagtctagtgatttttggatccttctttgttctcaatctggtt
ttgggagtcctcagcggggagttcagtaaggaaagggagaaggccaaagcccggggagac
ttccagaagctccgggagaagcagcagatggaggaggatctgtgtggatacatggactgg
atcactcaggcggaggacatggatgaactggacgaggacggaaacccacggccgtccctg
ggggatctgtccgataaaaagaggaagtttggctggttcagtcattccaatgacactcat
gcgagtcttccagcgagtgagacagcttcagagaacaccgagaacatcgatgaagaacac
accaactgctgccaagcctgctgtgcttctgtgatgaagatcagctgctgccagacgttg
cgtcgctggaaccgagtctgtcgcaggaactgccgcaccgctgtcaaatcggtgacgttc
tattggctggttctcctgctggtctttctgaacacctcactcagcgcctccgaacattac
aaccagcccgactggctgactcaagtccaggatatcgccaacaaggtgctgctgtctctc
ttcacggtggagatgctgctgaagatgtacagcttgggtctggcacattactttgtggcc
ttcttcaaccgctttgactgcttcgtggtgtgtggtgggatcatcgagaccattctggtg
gagctggagatcatgcctccactggggatcgctgtgctgcgctgcgtccgcctgctgcgc
atcttcaaggtcacacgccattggacggctctgtccaacctggtggcctccctgctgaac
tccatgaagtccattgcctccctgctgctgctcctcttcctctttctcatcattttcgct
ctgctcggcatgcagctgttcggaggaaagtttaacttcgatgagacacagaccaagcgg
agcacttttgatgccttcccgcaggcgctgctcacctgcttccagatcctgacaggtgag
gactggaatgtggtcatgtacgatggcatcatggcgtacggcggcccggtgttcccaggc
atgatcgtctgcatttattttgtcatcctcttcatctgtggcaactacatcctgctgaac
gtcttcttggccattgctgtcgacaatctggctggaggcgatggggatgacaagaagaaa
gaaaagaagactgagggtgagggagaggaggaggccgaaggagaagtgaaggtggacatc
gatgaagatacagagtatgaggaggaagaggagcttcctgaaggagaagacgacggaggc
gtccagctgaagatggctgaccttgctcctcctaaagagaaagttcttcccatcccagag
ggcagcgccttcttctgtctcagcaaaacaaacccgatccgtgtcgcctgccacacgctc
atccatcaccacatcttcaccaacctcatcctcgtcttcatcatcctcagcagctgctca
ttggctgctgaggatccaatcagagcgcactccttcaggaacaacattctgggttacgct
gactacgccttcacctccatcttcaccgtggagattctgctgaagatgacggtccatggc
gcgttcctccaccagggatccttctgcaggaactggttcaacctgctggacctcctggtc
gtcagcgtctcactcgtctccttcttcctgcactccagcgccatctctgtggtgaagatc
cttcgagtcctccgggtgctgcgacctctcagagccatcaacagggccaaaggactgaag
catgtggtccagtgtgtgtttgtggccatccggaccatcgggaacatcatgatcgtcacc
acgctgctgcagttcatgttcgcctgcatcggcgtccagctcttcaaggggaagttctac
cgctgcaccgacgaggccaagagcactccggaacagtgcaaaggaaccttcgtcgtctac
aaggacggagacgtgagccaccccatggtcagggagcgcatctggctgaacagtgacttc
aacttcgacaacgtcctgatggggatgatggcgctcttcaccgtgtccaccttcgagggc
tggcccgcactcctctacaaagccatcgacgccaacggagagaactcgggtccgatctac
aactacagggtggagatctccatcttcttcatcgtctacatcatcatcatcgccttcttc
atgatgaacatcttcgtgggttttgtcatcatcaccttcagagagcaaggagagcaggag
tacaagaactgtgagctggacaagaaccagcgtcagtgcgtggagtacgccctgaaggct
cagcctctgaaactctacatcccaaagaacccggttcagtacaagttctggtccatcatc
aattccacggggtttgagtacgtcatgttcgtcctgattctgctcaacaccgtcacactg
gccgtgcagcactacgagcagtccaagaccttcagctacgtcatggacatcctcaacatg
gtcttcaccggactcttcaccgcagagatgctgctgaagctgctggccctgcggctccgg
cactactttgtggacgcctggaactccttcgacgctctaatcgtggtcggcagcgtggtg
gacatcgtggtgacagagttcagcagcggcgaggacagctccagggtgtccatcaccttc
ttccgcctgttccgagtgatgcgactggtcaagctcctgaataaaggggaggggattcgc
acgctgctgtggacattcatcaaatcactgcaggcgctgccgtatgtcgctctgctcatt
gccatgatcttcttcatctacgctgtcatcggcatgcagacgttcgggaagatcgcgatg
caggactacactcagatcaacagaaacaacaacttccagacgtttcctcaggctgtcctg
ctcctcttcaggtgtgccacaggtgaagcgtggcaggagatcatgctggccagccttcca
gggaaacgctgcgatccggagtcggactacgaaccaggagaggagttcagctgcggaagc
aacttcgccattgtttacttcatcagcttcttcatgctgtgtgctttcctgatcatcaac
ctgtttgttgccgtcatcatggacaacttcgactatctgacgcgtgattggtccatcctg
gggccgcatcatctggatgaattcaaaaggatctggtcagagtacgatccagaggccaaa
ggtcggatcaaacatctggatgtggtggcgctgctccggaggatccagcctcctctgggg
ttcggcaagctctgtccgcacagggtggcctgtaagcgcctggtggccatgaacatgcct
ctgaacgctgacggcatggtgaccttcaacgccacactattcgctctggttcgcaccgcg
ctcaagatcaaaaccgaaggtagccctgagcaggagaatgaggagctgagggcgatcatc
aagaaaatctggaagcggatgaagccgaagctgctggatgaggtcatcccgccacatgaa
gaggaggaagtcaccgtcgggaagttttatgcaactttcctcattcaggattatttcagg
aagttcaggaagaggaaggagaaaggaaacgtgacgggagagtctgactctacgaatcca
tctgctgttcagctgtgtaaggcgggtctgaagacgctgcaggatctgggtccagagatg
cgtctggctctgaacgaagacctggaggacgaggaggaggcgctgatggacggcgacgat
ctggagaagaacgctgcctacaaggccgagaacggatttggaccagagactcgacgaggc
tccatgctgacacctactggcgatggcggcgtctcaaacggcggtctcatccaccgagtc
gggtcgctcagcatgatggcaaatggaaacgaacatgacgagcatcttcgtcgtggagac
agcgtgaggtcatcagtgagtcatcttcgccggccgtccgtgcagaacagcctgacagac
tccgcccacaagagaccgtcgtactacaaatatggacggagagactccagggacagatcc
tggaggaacggagacgtggatgtctacggagagcagggttatcacagccgagaggaggac
aatgagagcatcagctccagagacagacattaccccgacgactcgtcgctgtacagagac
caccgcgatagccacgccccctacagcaacggtagctatggcgacagttacagtgagggc
aggaggacgactcgcagacgcttacttcctgccactcccacaggccggaaaccgtccttc
aatatccagtgtctgaggcggcagggcagcagcgacgacctgccaattcccgggacgtat
cacccgacatcaccgccgcgccgcgcgcgacctcaggttttcagcagctacgactcccgc
cgtttgtccacccgctctgccgccgtgtcctcggcgtcctgggccaagtcgtgcccccgc
cgcgggcggctcctctacgcgccgctcatcctggtggaggaggagggtagcccgccctgg
gggggcgagggcaagaacggaggggcagcaagaggagcagcagatggaccgccctggttc
agtggatcagccgggagctcagctccgcccccgtaccgggcctacaccaccctcagggtt
ccctcgcagctcggcgctccgttcgctgagaaacggggatcggccgacagtctggtggag
gcggttctgatctcggagggactcggcctctacgcacgagaccccaagttcgtcgcgttc
gccaagcgagagatcgcagacgcgtgtcacatgacggtggacgagatggagtcggcggcc
agcgacctgctgagctccgggagccacgacttcctgaacaccatcggcgacgacccggcg
gcactctacagcgacgaggagccaatcaggacgagccgcgaggaggaggagctagctgac
gagatggcctgcgtgacctcattctga
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integrated database retrieval system
