Xiphophorus couchianus (Monterrey platyfish): 114152848
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Entry
114152848 CDS
T05908
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114152848 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114152848 (pcf11)
03019 Messenger RNA biogenesis [BR:
xco03019
]
114152848 (pcf11)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114152848 (pcf11)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114152848 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
114152848
NCBI-ProteinID:
XP_027886735
LinkDB
All DBs
Position
11:complement(13888746..13898878)
Genome browser
AA seq
1558 aa
AA seq
DB search
MDCLLLRGSVIGPATVAWFGCRSWKMEDQAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENIQFAKDIVAIIEAQISKAPTAEKLPVLYLVDSIVKNVGGEYLAVFAKNLIASFICV
FEKVEENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSLDPAWPIKPLPHNFNSTSSIHVN
PRFLKQPEEKAQTQPVPAKPAPVAPAPPPLPLAVPQTAPAGLTQEQLIRQQLLAKQKQLL
ELQQKKIELELEQTKAQLAGQGGLVLPPPIGSVPTESSPSQRPGQQVPPPIRPWIPLQPP
ADPKLSTRDPRLNRSGPPAAPQPAAKRQSPHPPGGSVAPAEKRAPEKPPRQDKGRPPRKD
PPEEKLKSKSPSPLARGPQSRSAEAETPKPAEAPRKDPRLKKRLPEKPAEAKDDELKEKK
RCVDKKERDDATRRAEPPRSNKAKPLNGLAPKHDHLEPADKPDPKAGAATVRRKRTHSRS
RSRSPTTSPKRKDRRSPKSHAHCGSLSPSHKAGKPRRVRGDDTTHGKLGRDDRPGAKKVQ
SDSRRPKRLQEERRSESRDSHSPRGHDAVKEAKESLHRWRSGWEENKHTKQPEESHTKSA
PPRHKPHGTPTRPGTPRNQKIRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEISQED
FLNMAHQIKHFFQYQEEKQQQRSESWDESGDFSMKKPSIPRPHDTMDAAELSYYEHKSKL
RKTQVNHRVTGDEGHETLDDVGEPRPGEKLGGRSGGHPYGRPGERRSKEREEVRTPPAPM
VEEYNHGKEFPKLKGLRFRRRDRPGDSSEREWTSPLTERQLYDDEHKSGYDTPRRYGPAD
TRRQDGPSPVTGGRRNSPGPAGLEAPPPRFERARLSPVHQKDSADMSPVPRFESPNSEHS
DEGPLDAPIPHLTSLKAPHHGGPSSGVRHSDSPGHTPPHEGGHASSRYSGPGHMGHSRLH
RPGWYEGSGPGRFEEPQFEGPHHPGPGRFEGPAHPNMAERTEGSGPCEGSRMAMRGGGDG
PFDGAPQVPSRFGGPVGQQQPVRFEGQMGGAGHLEGPMQCFDGPGPFNNMGPGPMGFQQQ
RPIHFEGPTNQMGPMRFDGPSRFEGPRFDLPGGPQAGPHQPGPPRFDYAPGQQGPPRFPP
QHNIQLPMQPMAPPLYDGPMGPQQSFGMAPQRFPEPMNPQFTPGPNMVPAANFTMQPVPF
SQPGPGPFYNPAAPAISMQQPVSMMGNLNQPFLPQNPVPFGQQAAQAAPAENHFGQLDVN
DLLSKLIFNGIIKPPSQAESSQTASEASSTATAPTIAGAVEEEEEEEPEVEEDEDLPDLT
AFSIDSMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVASKKV
THRRWYYSLTDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQV
GESCEICQEPFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKNTSSYLDATPSPSRLL
AEHPLGAFVKTEEEEGETSCQVTSCQIKLEVEDDVTVSGQEEPGSEAPADSARSEDTA
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctgctacgtggtagtgttattggtccagctactgtagcttggttcggg
tgtcggagctggaagatggaggaccaggcggcccgggaagacgcctgcagggagtaccag
tcctcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctcaccatcctg
gccgaagagaacatccagttcgccaaggatatcgtggctattattgaagctcaaatcagc
aaggcgccgaccgctgagaagctcccagttttgtacttagtggactccatagtgaagaac
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcgcttcatttatttgtgtc
tttgaaaaggtggaggagaacaccaggaagagcctgttcaagctgcgctccacctgggac
gacgtcttcccgctcaagaagctctatgccctggacgtccgggtcaactccctggacccg
gcctggcccatcaagccgctgccgcacaacttcaactccacctccagcatccatgtcaat
cccaggttcctcaagcagcctgaggagaaggcccaaacgcagccggtcccggccaagccg
gcgccggtggccccagcccccccgccccttcccctggcggtcccccagacagccccggcc
gggctgacccaggagcagctgatccggcagcagctgctggccaaacaaaagcagctgctg
gagctgcagcagaagaagatcgagctggagctggagcagacgaaggcccagctggcagga
cagggtggcctggtgctgccaccacctatcgggtcggttccgactgagtcaagcccatct
cagagaccgggtcagcaagttcctccccccatccgaccctggattcccctacagcctcct
gccgaccccaagctgtccacaagagacccccgtctgaaccgcagcggacctcctgccgca
ccccagccggctgccaagcggcagagcccccacccacccggggggtctgtggcccccgca
gagaagagggcaccagagaaacccccccggcaggacaaaggccggccccccaggaaggac
ccgccagaggagaagctgaagtccaagtctccgtctccgctggctagaggcccgcagagc
aggagcgcagaggcagagacgcccaaacccgccgaggcccctaggaaggacccccggctg
aagaagcgtctgccagagaagccggccgaggccaaggatgacgagctgaaggagaagaag
cgctgcgtggacaagaaggagcgggacgatgcgacgcggagagccgagccacccaggtcc
aacaaggccaaacctctgaacggcctggcgcctaaacacgaccacctggagcctgccgac
aagcctgacccaaaggccggcgcagccaccgtccgcaggaagcgcacacactcacggtcc
cgctcacggtcccccaccacctcccccaagaggaaggaccgccgctcgcccaagagccat
gcccactgcggctccctgtcgccgtcccacaaggccgggaaacctcggcgggtccgtggt
gacgacaccacccacggcaagctgggccgagatgaccggcccggcgccaagaaggtccag
tcggacagcaggaggcccaaaaggctgcaggaggagcgccgctctgaatccagggactcc
cactccccacgaggtcatgacgcggtcaaggaggccaaggagtcactccatcgctggagg
agtggctgggaggagaataaacacacgaagcagcctgaggaatcccacaccaagtctgca
cccccccgacacaaaccccatggcaccccgacccggcctggcacccccaggaaccaaaag
atccgcctcagcgtggacgccaacctgcagattcccgaagtcctcaactccgcctccaag
aaggacctgctgaggagggccagcaagcgtctggagagcggagagatttcccaggaggac
ttcctgaacatggcacatcagatcaaacacttcttccagtaccaggaggagaagcagcag
cagcgctcggagagctgggacgagtccggagacttctccatgaagaagccatccattccc
cgcccccatgacacaatggacgcagctgagctgtcctactatgagcacaagtccaagctg
agaaagactcaggtgaaccacagagtcacaggcgacgaaggccacgagactctagatgac
gttggggagccgagacctggagagaaactgggaggacggagcggtggacacccgtacgga
cggccaggtgaacggaggagcaaagagcgagaggaggtgcggaccccaccggcccccatg
gtggaggagtacaaccacgggaaggagttccctaagctgaaggggctccggttccgcagg
agggaccgccctggagattccagtgagcgggagtggacgtcaccactgacggagcgccag
ctctacgatgacgagcataagagcggctacgacaccccgcggagatacggccccgctgac
acccgccgacaggatgggccctcacccgtcactgggggccgcaggaactccccagggccc
gccggtctggaggctccgccccctcgatttgagcgggcacgcctgtcgcctgtgcatcag
aaagactcggcggacatgagtccagtccctcgctttgaaagtcccaacagcgagcactct
gacgaggggcccctggatgctcccattcctcacctcaccagcctgaaggctccacaccac
ggagggccttcgtctggtgtccgacacagcgactccccaggacacacgccgccccatgaa
ggaggacatgcctcctcgcgctacagtggccccgggcacatgggccattccagactgcac
cggcccggctggtatgaaggcagtggccccggccgctttgaggagccgcagtttgagggc
ccccaccacccgggccccggcagattcgagggcccggcgcaccctaacatggcagagagg
actgagggctccgggccctgtgaggggtcccgcatggccatgagaggaggaggagatggg
ccttttgatggggccccccaagtccccagcaggtttggaggccctgtaggccagcagcag
ccggtcaggtttgagggacagatggggggggccggtcacttggagggccccatgcagtgt
ttcgatgggccggggcccttcaacaacatgggtcctggcccaatgggcttccagcagcag
cggcccatccactttgagggcccaactaaccaaatgggtccaatgagatttgacggcccc
agtcgcttcgagggccccaggtttgatctgcctgggggcccccaggcaggacctcatcaa
cctgggcccccacgctttgactatgctcctggccagcagggtccgcccaggttcccccca
cagcacaacatccagctgcccatgcagcccatggccccgcccctctacgacggccccatg
ggcccccagcagagcttcggcatggccccccagcggtttccagaacccatgaaccctcag
ttcacccccggccccaacatggtgccggcagcaaacttcaccatgcagccagtcccgttc
agccagccaggccccgggcccttctacaatcctgcggctcccgccatcagcatgcagcag
ccggtctccatgatggggaacctgaaccagcccttcctgcctcagaacccagtgcctttc
ggacagcaggctgcgcaggcggctcctgcagagaaccacttcggtcagctggacgtcaac
gaccttctgtccaaactcatcttcaacggcatcatcaagccgccgtcgcaggcagagtcc
tcgcagaccgccagcgaggcgtcgtccacggcaaccgccccgacaattgccggggctgtg
gaggaggaggaagaggaggagccagaggtggaggaggacgaagatctgcctgacctcacc
gccttcagcatcgacagcatgaagcagcgctatgagagcgtggtgaccaagctgtactca
gggaaccagtgctgcctctgcagcatgcgctttacggcggcgcagaccgacctgtatgcc
gaccacctggactggcacttcaggcagaaccatgccggcaaggtcgctagcaagaaggtc
acacaccgccgctggtactacagcctgacggactggatcgaatttgaggagatcgccgac
ctggaggagcgcgcaaagagccagttctttgagaaggagaatgaggaggaggtccagaag
aaccaggcggctgccaaggagaaggagttccagagcgtccgcgccaccaaggaccaagtg
ggagagtcgtgtgaaatctgccaggagccatttgagacgtactgggtggaggaagaggag
gactggtttctgaagaacgctgtcagagtggacgacaagaacttccacccggcctgcttc
gaggactataagaacacgtcgtcctacctggacgcaacgccgtcccccagtcggctgctg
gccgaacacccgctgggcgccttcgtcaagaccgaggaagaggagggcgagacttcctgt
caggtcacttcctgtcagatcaaactggaagtagaggatgacgtcaccgtttctggtcag
gaggaaccgggctctgaggcgccggcggactccgcccggtccgaggacacggcttga
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integrated database retrieval system
