Xiphophorus couchianus (Monterrey platyfish): 114154656
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Entry
114154656 CDS
T05908
Symbol
slf1
Name
(RefSeq) SMC5-SMC6 complex localization factor protein 1
KO
K26126
SMC5-SMC6 complex localization factor protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114154656 (slf1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
114154656 (slf1)
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Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
RTT107_BRCT_5
BRCT
TcdB_N
Motif
Other DBs
NCBI-GeneID:
114154656
NCBI-ProteinID:
XP_027889760
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Position
12:20535234..20573972
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AA seq
880 aa
AA seq
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MESCTHVFQISGIKAQDKKRVLIKGIYQLGGKYIGGSVYKHCTTHLITPQVLPSEKFLAA
CAAGKWVVTPNYVLESMKNGSWLPEGPYEVAIFTSPSAAFYPVRQWREKVAKGRITGAFQ
GWKVLLMVQEPNRRAMFKRLLKAGRAEVYNSPPPMYTPITHVMAKPVTEKTKSLNSPCYP
VSHIVQHLFGSNRLDMDFNKMDDLPSETKASCLEGFSNLEAELRNFAVKKEGRPRLCFLE
FLGYSDPHRPFTQAIVADLSNVSSMIECGLLSEALDSIRNAVFPGVLPPATYLISLIEYA
QQGNATSLFLRDFHQVMVNLLITNPPWLAQNSVKKYYAQVLQCPQCKMGLWPLLETAIRY
CLTNSDTCHPHPGPALPALVHFYCDMLALCLMLLKGELHSVNSRDFMFSNQPRASSAPAS
GSLLYGTFWTVWERTTLLSCTVKKLLQLLKEAAIMEFAEGAEKRELYLADTLLDLLSVLV
EFWCQQHFKLNQSLVEKGLKDLSEHLAILSQDLCPAVLVELVCRVHSTRLKLVVVDAIFR
NLCCRNGFIVGDEPLSLKKMVCSYLPALGTLAQSPSFASYKTEKTSHSCTSQGTSRTENR
PVTEESPERENAPRGMNRVNAAGETLLHRACKTNQVETVLQILAFPGTDVNVKDHAGWTP
LHEACNHGSTECVRALLHHHPAPVLTDQVAGVSPLHDALLNGHLDIAKMLLEHAGSVLLQ
QTDRDGQTPLDLVSVPSQREELLRSAQVRDSVRTNKDKTEVLNLPLLEAGSSLLGHLIFS
YQLERGLPGLTQSGNRPQTLVYKLVAALEKHSLQKVTSDWTDQRAVRLAEDMETLLRLSR
GEHKEQVSAAAKECRGENTVFLMETLKNLQARGKALVADL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggagagctgcacacatgttttccagatctctgggatcaaagcgcaggataaaaagaga
gttttgattaagggcatttatcagctcggtggaaaatacattggtggctcagtatacaag
cactgtaccactcacctcataaccccccaggttttgcccagtgagaagtttttggcagct
tgtgcggcagggaagtgggtcgtgactcctaactatgtgttggaaagcatgaagaatggc
tcgtggttgcccgagggaccctatgaagtggccattttcaccagcccctcagctgccttt
taccccgtcagacagtggagggaaaaggtagccaaaggtagaataactggtgcttttcag
ggctggaaagttcttctcatggtccaagagcccaacagaagagccatgttcaaacggctg
ctgaaagctggaagagcagaagtgtacaactctccgccacctatgtacactcccatcact
catgtcatggcgaaacctgtgacggagaaaacaaaatctcttaactcaccttgttaccct
gtgagccacatagtgcaacacctcttcgggagcaatcgcctggatatggattttaacaaa
atggatgatcttccgtctgagacaaaagccagttgtcttgaaggcttctctaatttggag
gcagaactcaggaattttgctgtcaaaaaagagggccggcccagactgtgcttccttgag
tttctaggttacagtgaccctcatcgtcccttcacacaggcaattgtagcagatttaagc
aacgtcagtagtatgatagagtgcggcctactcagcgaggccttggattcaatcagaaat
gccgtgtttccaggcgtgttgccaccagcgacatacctgatctccctcatagagtacgca
cagcagggtaacgccacgtccctctttctgagagatttccatcaggttatggtaaacctg
ctcattacaaatcctccatggctggctcaaaattcagtgaaaaaatactatgcccaagtg
ctgcagtgtcctcagtgcaagatgggcttatggcctcttttagagactgcaatcagatac
tgcctgacaaacagcgacacctgtcacccacaccctggacccgccttgccagctttggta
catttctactgtgacatgcttgcactttgcctcatgcttctcaagggtgaacttcactct
gtcaatagcagagactttatgttttctaaccaacccagagcgtcatctgcaccagcttct
ggttcattgctctatgggactttctggaccgtgtgggaacgaacaacactgctgtcctgc
actgtgaaaaagcttcttcagctcctaaaagaagctgccattatggaatttgctgaggga
gcagagaagcgggagctgtatttggcagacactctgctggatcttctgtctgtgttggtg
gagttttggtgtcagcagcattttaaacttaatcagagtctggtggaaaaaggcctcaaa
gacctctcggagcaccttgccattcttagccaggatctgtgtccagccgttttggtagag
ctggtttgcagagttcactccaccagactaaagttggtcgtagttgatgccatcttcagg
aatctctgctgcagaaatggcttcattgttggcgatgaacctctctctctcaagaaaatg
gtgtgttcttacttgcccgctctgggaacgttagctcaaagtcccagctttgcttcctac
aagactgagaaaacctcccacagctgcacgagtcaggggaccagcaggaccgagaacagg
ccggtgactgaagaaagccccgagcgagaaaatgcccccagaggcatgaacagagtgaac
gcagcaggcgagaccctcctacacagagcttgcaagacaaaccaagtggaaacggtgctt
cagatcctggcgtttcctggcacagacgtcaatgttaaagaccatgcaggctggactcct
ctccatgaagcatgcaaccatggcagcactgagtgtgtgagagcattgctgcatcaccac
cccgcccctgtcctcactgaccaggtcgccggagttagtccactgcacgatgccctgctg
aacggacacttggacatcgctaaaatgttactggaacatgcaggctcggttcttctccag
cagaccgacagagacggacagactccactggatctggtctctgtaccgagtcagagggag
gagctcctccgcagcgctcaggtcagagattcagtccgcacgaacaaagacaaaactgag
gttttgaaccttcctctcctcgaggctggatctagtctgctgggccatctcattttctcc
taccagttggaaaggggtctgcctggcctcacacagtcggggaacagaccccagaccctg
gtctacaagctagtcgctgcgttggagaaacactcccttcagaaagtcacttcggactgg
acagatcagcgggcagtgaggctggcggaagacatggagacattgttgaggctcagtcga
ggagagcacaaagaacaggtgtctgcggctgccaaggaatgcagaggagaaaacacggtt
ttcctgatggaaacactgaagaacctacaggctcgtggcaaggcactagttgctgatttg
taa
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