KEGG   Xanthomonas campestris pv. raphani: XCR_2579Help
Entry
XCR_2579          CDS       T01872                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xcp  Xanthomonas campestris pv. raphani
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xcp00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    XCR_2579 (ligD)
Enzymes [BR:xcp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XCR_2579 (ligD)
DNA repair and recombination proteins [BR:xcp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XCR_2579 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(2699703..2702252)
Genome map
AA seq 849 aa AA seqDB search
MSLSEYRRKRSFDKTREPEPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPVDYARFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGSLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDITDAAFAPQLAKLGQAPPE
GAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDGELI
AGRGTKEDFNLLQATLWGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQVLANAPA
GHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRAGRSDDWRKTKQLASQEYVVVG
YTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEVTQHLHGGGKRPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGVGGQQLLRQASLKAVRLDKDIADLADSDTGDVSPAQA
DVANTPARGRKRANKQAPAQGEPTLSSPTKLIYPDIRATKGDVWEYYHAVMDHLLPEIVG
RPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRLKEETGSNAHYLVVEDAPGLLELVQFN
ALEFHPWGSHAARPDMADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLELESFLRVSGG
KGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPDRFVATATKRFRNKRIFVDYLRNGRG
ATAVASYSLRGRPGAPVALPLPWSDLAKLHRANAFTLRDVPDKLRRRRKDPWADIAQIQQ
NLARWADQG
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atgagcctcagcgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagcca
ggcaagctgctgccacaggggcaacgggcgatcttcgtggtgcagctgcatcatgccagc
cggcgccactacgatttccgcttgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagctacgacccggcagtgaagcgcatggcggtagaggtggaagaccacccg
gtggactacgccaggttcgagggcgagattccgaagggcgaatacggcggcggccacgtg
gcccagttcgatcatggggtctgggccaccgccggtgacccggaagcacagctggccaag
ggccacctgcgcttcgagttgttcggcagcaagctcaagggcggctggcacctggtgcgc
tcgagcaagccggcccgccagccgcagtggttgctgttcaaggaagacgacgcctatgcc
ggctcgctggaagccgacgatctgctggccgatgtggctgccgcgccagcagaggatgta
cgtcgcgccggggccggcaaggcccaacgcaaggcactcaccaccgtgcctgtgccacgg
gcgcgtgcacgtaacgcctggaccaacgccgcgttgaaactcacgcacgcgcggcgcggc
gacatcaccgatgccgctttcgcaccgcagctggccaagcttgggcaggcgccgccggaa
ggggcgcaatgggtgcatgaaatcaagtgggacggttatcgcatcctggccacggtgacc
gatggccaggtacggctgtggtcgcgcaatgcgctggaatggaccgacaagattcccgat
atccgcgatgcgatccaggcgctcaacctgcgctcggcacggctggatggcgagctgatc
gccgggcgtggcaccaaggaggatttcaacctgctgcaggcgaccttgtggggcgaacgc
caggtgccgctggcgctggcggtgttcgacctgctgcacatcgatggcgtggagatcagc
gaggcgccgctgcgcgaacgcaagcagctcttgcagcaggtcctggcgaatgcgcccgcc
ggccacctggcctacagctcgcatgtggagggcgatgggctggaggcgttccgggtcgcc
ggcgagcagcactttgaaggcatcatttccaagcgtgccgaccggccgtaccgcgccggt
cgcagcgatgattggcgcaagaccaagcagttggccagccaggaatatgtggtcgtcggc
tataccgcgcccaagggcagccgtaccggcttcggctcgctgctgctggccacgccggac
ccgcagcacggctggttgtatgtggggcgggttggttctggcttttcggatacgttgatg
caggaggtgacccagcatctgcacgggggcggcaagcggcctaccgcgcatatccccacc
gaggacaccgatctgcgtggcgccacctggttcgcgccgcggttcgtggtggaggtgttc
tatcgcggtgtcggggggcagcagctgttgcgccaggcctcgctcaaggcggtgcgtctg
gacaaggacatcgccgacctggccgacagcgataccggggatgtcagtcccgcgcaggcc
gacgtggctaacacgcccgcgcgcgggcgcaagcgtgcaaacaagcaagcgcccgcgcag
ggcgagcccacgttgtccagcccgaccaagctgatctacccggacatccgtgccaccaag
ggcgatgtctgggagtactaccacgcggtgatggatcacctgctgccagagatcgtgggg
cggccgttgtcgatcatccgttgccccaacggtgcggaaaaaccgtgctttttccagaag
catcacaccgccgggctggagcgggtgagctcggtgcggttgaaggaagaaaccggcagc
aatgcccactatctggtggtcgaggatgcgcccggactgctggaactggtgcagttcaat
gcgctggaattccacccctggggctcgcatgcggcgcgaccggatatggctgaccgcgtg
gtgttcgatctggatccgggcccggatgtgccatttgccgaggtcaaacgggccgccacc
gatatccgcaagctgttggcgcagctggagctggaatcgtttctgcgcgtgtccggtggc
aagggcctgcacgtggtggtgcccttgaaccccggctgcgattgggagctgaccaagcgc
tttgccaaaggctttgccgacgcgttggcgcaatccgagccggaccgcttcgtagccacg
gcaaccaagcgcttccgcaacaaacgcatttttgtcgattacctgcgcaacgggcgcggg
gccaccgcagtggcgtcgtactcgctgcgcggccgcccgggcgcaccggtggcactgccg
ctgccgtggtcagacctggccaagctgcatcgcgccaacgccttcaccctgcgcgatgtg
ccagacaagttgcgtcgccgccgcaaggacccctgggcagacatcgcgcagattcaacag
aacctggcgcgctgggcggaccagggctga

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