Xanthomonas citri pv. citri UI7: J159_00056
Help
Entry
J159_00056 CDS
T03733
Name
(GenBank) type III secrection effector, AvrBs3 family, transcription activator-like effector
Organism
xcu
Xanthomonas citri pv. citri UI7
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAL_effector
Motif
Other DBs
NCBI-ProteinID:
AJY80065
LinkDB
All DBs
Position
pXAC64:14558..17848
Genome browser
AA seq
1096 aa
AA seq
DB search
MDPIRSRTPSPARELLPGPQPDGVQPTADRGVSPPAGGPLDGLPARRTISRTRLPSPPAP
SPAFSAGSFSDLLRQFDPSLFNTSLFDSLPPFGAHHTEAATGEWDEVQSGLRAADAPPPT
MRVAVTAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHH
EALVGHGFTHAHIVALSQHPAALGTVAVKYQDMIAALPEATHEAIVGVGKQWSGARALEA
LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASN
IGGKQALETVQALLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE
QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC
QAHGLTPEQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETV
QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG
GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV
VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQA
HGLTPEQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNIGGKQALETVQR
LLPVLCQAHGLTPEQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK
QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV
ALACLGGRPALDAVKKGLPHAPALIKRTNRRIPERTSHRVADHAQVVRVLGFFQCHSHPA
QAFDDAMTQFGMSRHGLLQLFRRVGVTELEARSGTLPPASQRWDRILQASGMKRAKPSPT
STQTPDQASLHAFADSLERDLDAPSPTHEGDQRRASSRKRSRSDRAVTGPSAQQSFEVRV
PEQRDALHLPLSWRVKRPRTSIGGGLPDPGTPTAADLAASSTVMREQDEDPFAGAADDFP
AFNEEELAWLMELLPQ
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggatcccattcgttcgcgcacaccaagtcctgcccgcgagcttctgcccggaccccaa
cccgatggggttcagccgactgcagatcgtggggtgtctccgcctgccggcggccccctg
gatggcttgcccgctcggcggacgatctcccggacccggctgccatctccccctgccccc
tcacctgcgttctcggcgggcagcttcagtgacctgttacgtcagttcgatccgtcactt
tttaatacatcgctttttgattcattgcctcccttcggcgctcaccatacagaggctgcc
acaggcgagtgggatgaggtgcaatcgggtctgcgggcagccgacgcccccccacccacc
atgcgcgtggctgtcactgccgcgcggccgccgcgcgccaagccggcgccgcgacgacgt
gctgcgcaaccctccgacgcttcgccggccgcgcaggtggatctacgcacgctcggctac
agccagcagcaacaggagaagatcaaaccgaaggttcgttcgacagtggcgcagcaccac
gaggcactggtcggccatgggtttacacacgcgcacatcgttgcgctcagccaacacccg
gcagcgttagggaccgtcgctgtcaagtatcaggacatgatcgcagcgttgccagaggcg
acacacgaagcgatcgttggcgtcggcaaacagtggtccggcgcacgcgctctggaggcc
ttgctcacggtggcgggagagttgagaggtccaccgttacagttggacacaggccaactt
ctcaagattgcaaaacgtggcggcgtgaccgcagtggaggcagtgcatgcatggcgcaat
gcactgacgggtgcccccctgaacctgaccccggagcaggtggtggccatcgccagcaat
attggtggcaagcaggcgctggagacggtgcaggcgctgttgccggtgctgtgccaggcc
catggcctgaccccggagcaggtggtggccatcgccagccacgatggcggcaagcaggcg
ctggagacggtgcagcggctgttgccggtgctgtgccaggcccatggcctgaccccggag
caggtggtggccatcgccagcaatattggtggcaagcaggcgctggagacggtgcagcgg
ctgttgccggtgctgtgccaggcccatggcctgaccccggagcaggtggtggccatcgcc
agccacgatggcggcaagcaggcgctggagacggtgcagcggctgttgccggtgctgtgc
caggcccatggcctgaccccggagcaggtggtggccatcgccagcaatattggtggcaag
caggcgctggagacggtgcagcggctgttgccggtgctgtgccaggcccatggcctgacc
ccggagcaggtggtggccatcgccagcaatggcggtggcaagcaggcgctggagacggtg
cagcggctgttgccggtgctgtgccaggcccatggcctgaccccggagcaggtggtggcc
atcgccagccacgatggcggcaagcaggcgctggagacggtgcagcggctgttgccggtg
ctgtgccaggcccatggcctgaccccggaccaggtggtggccatcgccagcaatggcggt
ggcaagcaggcgctggagacggtgcagcggctgttgccggtgctgtgccaggcccatggc
ctgaccccggaccaggtggtggccatcgccagcaatggcggtggcaagcaggcgctggag
acggtgcagcggctgttgccggtgctgtgccaggcccatggcctgaccccggaccaggtg
gtggccatcgccagcaatggcggtggcaagcaggcgctggagacggtgcagcggctgttg
ccggtgctgtgccaggcccatggcctgaccccggaccaggtggtggccatcgccagcaat
attggtggcaagcaggcgctggagacggtgcagcggctgttgccggtgctgtgccaggcc
catggcctgaccccggagcaggtggtggccatcgccagcaatattggtggcaagcaggcg
ctggagacggtgcagcggctgttgccggtgctgtgccaggcccatggcctgaccccggag
caggtggtggccatcgccagcaatattggtggcaagcaggcgctggagacggtgcagcgg
ctgttgccggtgctgtgccaggcccatggcctgaccccggagcaggtggtggccatcgcc
agcaatattggtggcaagcaggcgctggagacggtgcagcggctgttgccggtgctgtgc
caggcccatggcctgaccccggagcaggtggtggccatcgccagccacgatggcggcaag
caggcgctggagacggtgcagcggctgttgccggtgctgtgccaggcccatggcctgacc
ccggagcaggtggtggccatcgccagcaatggcggcggcaggccggcgctggagagcatt
gttgcccagttatctcgccctgatccggcgttggccgcgttgaccaacgaccacctcgtc
gccttggcctgcctcggcggacgtcctgcgctggatgcagtgaaaaagggattgccgcac
gcgccggccttgatcaaaagaaccaatcgccgtattcccgaacgcacatcccatcgcgtt
gccgaccacgcgcaagtggttcgcgtgctgggttttttccagtgccactcccacccagcg
caagcatttgatgacgccatgacgcagttcgggatgagcaggcacgggttgttacagctc
tttcgcagagtgggcgtcaccgaactcgaagcccgcagtggaacgctccccccagcctcg
cagcgttgggaccgtatcctccaggcatcagggatgaaaagggccaaaccgtcccctact
tcaactcaaacgccggaccaggcgtctttgcatgcattcgccgattcgctggagcgtgac
cttgatgcgcccagcccaacgcacgagggagatcagaggcgggcaagcagccgtaaacgg
tcccgatcggatcgtgctgtcaccggtccctccgcacagcaatcgttcgaggtgcgcgtt
cccgaacagcgcgatgcgctgcatttgcccctcagttggagggtaaaacgcccgcgtacc
agtatcgggggcggcctcccggatcctggtacgcccacggctgccgacctggcagcgtcc
agcaccgtgatgcgggaacaagatgaggaccccttcgcaggggcagcggatgatttcccg
gcattcaacgaagaggagctcgcatggttgatggagctattgcctcagtga
DBGET
integrated database retrieval system
