KEGG   Xanthomonas gardneri: BI317_00950Help
Entry
BI317_00950       CDS       T04668                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xga  Xanthomonas gardneri
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xga00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BI317_00950
Enzymes [BR:xga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BI317_00950
DNA repair and recombination proteins [BR:xga03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BI317_00950
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
214576..217350
Genome map
AA seq 924 aa AA seqDB search
MSLHDYNAKRRFDQTPEPAGETPARASKQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYASFEGDIPQGHYGAGHVDVFDHGHWHCEGDALAALDA
GKLEFELQGTLLRGGFALVRTQMRGGKPQWLLFKRTDAYATDLDADALVAQQAAGSSDVA
TSATRAKTASVTTRGKTSRAQRVPPDAIAETSTVTSKRVRSGRAGSKQWRTRALALDGAR
DTPCPTELRAQLTLLREQAPEGERWLHEIKWDGYRLLADMVDGNVQLRSRNDQAWTQRFP
EVVRALQALPVRDARLDGELVVLDAQGRSDFSALQRALDGSVTQPLRYIVFDLLGVAGVD
LRGTPLLQRKQLLRELLGDQPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLAEARYRE
GRSADWVKTKHANSDEFVVVGYTDPKGARSGFGALLMAQRDGKTLRYVGRVGTGFDDALL
GKITTLLQALHSETATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRL
REDKPMSELGGDRAVPGKPRAANRSGDATRAIAPARKTATKKAAKTTAEPSTRTASKRVR
STASKTTAISKTAASKSRASKSAASKSTASKSTSTDGINITHPERVVFPAVGISKGDVAD
YYRAVAPLVLAEIARRPLSLLRCPDGTGGECFFQKHEGRHLGAHIKAIALKQKSGTEDYI
YVEDAAGLLELVQMNTLELHPWGAQIEDPEHPDRLVFDLDPGDDVSWPDVVAAARDIRAK
LRSAGLESAVRLSGGKGLHMVVPIVPEAGWEQARDFCEAFAQALATHTPDRYVATMSKAK
RHGVIFVDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALQRAK
RQRADPWESVLALQQYLPTGDDHN
NT seq 2775 nt NT seq  +upstreamnt  +downstreamnt
atgtcactgcacgactacaacgccaagcgccgcttcgaccagacaccggaaccggccggc
gagacgcctgcgcgcgccagcaagcagccgattttcgtggtgcagctgcaccacgccagc
tcgcgccattacgacttccgtctggaagccgatggcgtgctcaagagttgggccgtgccg
aagggtccgtcgttgcgcgttggcgaaaaacgccttgcggtgcaggtggaagatcatccg
ttgtcgtacgccagtttcgaaggcgatatcccgcaagggcattacggcgcaggccatgtg
gatgtgttcgaccacggccattggcactgcgaaggcgatgcgttggccgcgctggacgcg
ggcaagctggaattcgagttgcagggcacgctgctgcgcggtggctttgcgttggtgcgc
acgcagatgcgtggcggcaaaccgcagtggctgctgttcaagcgcaccgatgcctacgcg
accgatctggatgccgatgcactggtggcgcagcaggccgccggttcatcggatgtggca
acttcggcaacgcgtgccaagacagcatcggttacaacgcgcggcaagactagccgtgcg
caacgtgtgccgccagacgcaatcgccgagacatcgacagtgacaagcaaacgtgtgcgc
tcagggcgtgcagggtccaaacagtggcgtacccgcgcactggcgctggatggcgcgcgc
gatacgccatgcccaaccgagctgcgcgcgcaactgaccttgctgcgcgagcaggcgccg
gagggcgagcgctggctgcacgagatcaagtgggacggctatcgcctgctggccgatatg
gtcgatggcaacgtgcagttgcgctcacgcaacgaccaggcctggacgcagcgcttcccg
gaggtggtgcgcgcgttgcaggcgttgccggtgcgcgatgcgcgcctggatggcgagctg
gtggtgctggacgcgcaagggcgcagtgatttctcggcgctgcaacgcgcgctcgatggc
agcgtcacgcagccgctgcgctatatcgtgttcgacctgctcggggtcgccggggtggat
ctgcgcggcaccccgttgctgcaacgcaagcaattgctgcgcgagttgctgggcgatcaa
ccgggcacgctggcatttagcgaccatgtgatcggtcacggcccggaagtgttcgcggcc
agtgccggcaccggctgggaaggcatcgtcagcaagctggctgaagcgcgttatcgcgaa
ggacgcagcgccgattgggtcaagaccaagcacgcaaacagcgacgagttcgtggtggtg
ggctacaccgaccccaagggcgcacgcagtggttttggcgcattgctgatggcgcaacgc
gacggcaagacgctgcgctatgtcgggcgtgtaggcaccggtttcgacgatgccttgctc
ggcaagatcaccacactgttgcaggcgctgcatagcgagactgccacgctggaattgccc
acgcatatccctgggcggccacgcgatgtgcattgggtgcgaccggtgttgatcgccgag
gttgcctttcgcggttgggccaaggaagggctgctgcggcaagccgcgttcaagcgtttg
cgtgaggacaaacccatgagcgagttgggcggcgatcgcgccgtgccgggcaagccgcgt
gctgcgaatagaagtggggatgcgacgagggccattgcgcctgcgcgcaagaccgcgaca
aagaaagcagccaaaacgacagccgaaccatccaccaggactgccagcaaacgcgtgcgt
tcgacggcatcgaagacgaccgctatatcgaagactgcagcgtccaaatccagggcatcg
aaatccgcagcgtccaagtccaccgcgtctaagtccacgtccacagacggcatcaacatc
actcatcccgagcgcgtagtgtttcctgcggtcggtatcagcaagggcgatgtggctgac
tactaccgcgcagtggcgcccctggtgctggcggaaatcgcacgccgcccgttatcgctg
ttgcgctgccccgacggcaccggcggcgagtgcttcttccagaagcacgaaggtcgccat
ctgggcgcgcatatcaaggcgattgcgctaaagcaaaaaagcggcaccgaggactacatc
tatgtcgaagatgccgccggcctgcttgagctggtgcagatgaacacgctggagttacat
ccctggggcgcgcaaatcgaagacccggagcatccggatcgcctggtgttcgatctggat
cccggcgacgacgtgtcctggcccgatgtggtcgccgccgcgcgcgacatccgcgccaag
ctgcgcagtgcagggctggaaagcgcggtgcgcctgtccggaggcaagggcctgcacatg
gtggtgccgatcgtgccggaggcgggttgggagcaagcgcgcgatttttgcgaagcgttc
gcacaggcactggcaacgcacaccccggaccgctacgtggcgaccatgagcaaggccaag
cgccacggcgtgatcttcgtcgactggctgcgcaacggacgcggcaataccagtgtgtgt
tcgtggtcgctacgcgcccgcgaaaaagccaccgtcgccgtgccgctgcgctgggaagaa
ctcggcaagatcagcggcccggatgcgtttccgatggacaaggcattgcaacgtgccaag
cgccaacgcgcagatccatgggaatcggtgctggcgttgcagcaatacttgcccacgggc
gacgatcataactaa

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