Xiphias gladius (swordfish): 120790481
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Entry
120790481 CDS
T07311
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120790481 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
120790481 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120790481 (lsm4)
03041 Spliceosome [BR:
xgl03041
]
120790481 (lsm4)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120790481 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
120790481 (lsm4)
Spliceosome [BR:
xgl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120790481 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TFIIA
Motif
Other DBs
NCBI-GeneID:
120790481
NCBI-ProteinID:
XP_039983968
LinkDB
All DBs
Position
LG6:10545011..10549818
Genome browser
AA seq
164 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGMTG
SGRGQQQQQQQQQQQQQQQQQQQPQLQQQQDKKPGKPQGMKNQH
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctatctctgctgaagactgcccagaaccatcctatgctggtggagctgaag
aacggagagacgtacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcaagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatcccagacgagatcatcgacatggtgaag
gaggaggtggtgtcaaagggccgtggacggggaggcgcccagcagaacaaacagcagggc
aaaggaagggggggagccggccggggtctgtttggtggtcgtggcagaggaatgaccggc
agtggtcggggccaacagcagcagcagcagcagcagcaacagcagcagcaacaacagcaa
cagcagcagccgcagctgcagcagcagcaggataagaaaccaggcaaaccacagggaatg
aagaaccagcactga
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