Xiphias gladius (swordfish): 120795093
Help
Entry
120795093 CDS
T07311
Symbol
col12a1a
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xgl00535
]
120795093 (col12a1a)
Proteoglycans [BR:
xgl00535
]
Extracellular matrix (ECM) proteoglycans
Others
120795093 (col12a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Collagen
Pur_ac_phosph_N
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120795093
NCBI-ProteinID:
XP_039992553
LinkDB
All DBs
Position
LG10:9895935..9953517
Genome browser
AA seq
3115 aa
AA seq
DB search
MKIRLSLAVAALLAVLLSSIDAQVEPPSDLKFKILNENTVEMSWTIPSSRIEGFRIQVMS
DADEPVRDLTLEAYVTMTSITDLTPDLDYSVSINSFFGSEESIPIFGQLTIQSSNTSERV
RRPQSDAIKCSVSAIADLVFLVDGSWSVGRENFKHIRSFISSLAGAFDIGEDKTRVAVVQ
YSTDTRTEFPLTRYNRRGDLLQAINSLPYKGGNTMTGDAIHYLLRNIFTEGAGSRKAFPK
VAMIITDGKSQDPVEEHAKRLRNIGVEIFVLGIKGADEDELRDMASTPYNKHVYNVPNFD
LIQEVQKKIIQEVCSGVDDQLSSLVSGEEMVEPASNLQVTEIASKSMRVTWDASLGDITG
YKLTLNPMLPGMKRQELYMGATQTSINVRDLSPETEYEINLYALKGLTPSEPTIALEKTQ
PVKVSTECSLGVDVQADVVLLVDGSYSIGLQNFAKVRAFLEVLVNSFDIGPSKVQISLVQ
YSRDPHTEFALNTHHDINAVVKAVRTFPYRGGSTNTGKAMAYVREKIFIPARGARQNVPR
VMVLITDGKSSDSFKDAATNLRNIDVEIFAVGVKDAVRSELEAIANPPADTHVYEVEDFD
AFQRISKELTQSICLRIEQELLNIKKRSLLPPRDLQFSEITSRSFRTTWTAPTTSVMSYL
VRFRKAEDVTGDYISLAVPGDTTTAVLPHLYPLTAYEVNVFAQYEKGDSFPLTGEETTLE
VQGTVRNLRVTEETINSFRVSWQAAPGSVIRYRLSYVPLNGAGETLEAQTIGPETTIVLQ
ELFPITTYRVSVSAEYATGIGKEMQVDGTTKEARGTPRDLRVFDETVSTMKLAWQAAPGN
VLQYRIAFKPADGGERKEISVKGDTTQAVLKNLQPATEYELFVSARYSSGLGDPLLGTGT
TLEELGSPRDLVTKDITDTSFAVSWTAAPGNVRQYWIRWKSLFTEEAGEKTIPGDTTATV
LEGLTPETRYQVSVFAGYGRGEGQPLVGEETTDVSAAGRAIVVSEETEKSMKVTWQAAPG
NVLNYRVTYKPQAGGRQLAAKVAGGTTSTVLRRLTPLTTYDITVLPVYRSGEGKARQGVG
TTLSPFKGPRNLHTSEPTKTSFRVTWDHAPGDVRGYKVTFHPVGDDIDLGELRVGPYDNT
VVLEELRAGTKYSVNVFGMFDGGESMPLAGEEKTTLSDGPEPPPFETPDVMCKTTAQADI
VLLVDGSWSIGRLNFKTIRAFIARMVGVFDIGPERVQIGLAQYSGDPKTEWYLDAHRTRE
SLLEAVANLPYKGGNTLTGLALNYILQNNFKENVGMRPNSRKIGVLITDGKSQDDVIVNS
QNLRDQGIELYAIGVKNADENELRSIASDPDDIHMYNVADFSFLLDIVDNLTDNLCNSVK
GPGGAADAPTNLVTSEITHHSFRATWTAPEGPVEKYLVEYMTLSGLPQQVFVDGTENTVV
LQKLFPLTKYLVSVYSVVGEENSEPLKGTETTLPLSAVRRMDVYDEQTTTMRVRWEEVDG
ANGYMLLYNTMNATEPTLEQEIRVGGDTTDVQLVKLLPNTAYMLSLFALHGESASGPLTN
QGVTLPLPPAGELRVRDVTHSTMRLIWDAAPGPVRKYLITYKPVDGEAKELEVGGSVTDR
QLDNLISQTEYGLAVTPIYDGGTGQPMLGEAITGVVPAPKSLRFSEVTQTSFRASWEHGA
PDVALYRIGWTKKGETSLEYAIVNSDETTHLLENLEPDTPYDVSITAIYPDESESEDLLG
TERTLSRQGGRPTPNAPPTDLVVFNETTTSLNARWNPAPGRVQNYRITYVPTSGGRSQTT
QVGGKKNTVLLPKLTPDTEYTITVVAVYARGVSRELNGLGKTKPLGGVRNLQVIDPTTST
LNVQWEAAEGIVRQYRVFYVPAAGGDEEMVQVSGSTYNTVLKNLQSDTVYTVTLVPVYSA
GEGQRMSENGKTLERSPVRNIQVFNPSTNSLNVRWDAATGPVQMYRVIYTPQTGTRPSES
LVVPGTTTTALLQPLLPDTEYNIGVVALYSDGEGPTITDNGKTIPRSGPRNMRVYDPTTT
TLSVSWEHAEGPVMQYRITYAQTIGDPIEEYTTVPGNRNDVILQNLDPDTPYNIKVTAIY
ADGPGGVLEGDGRTVGMLGPRNLRVSDEWYTRFRVAWDPAPSRVNGYKLIYQPEGSDESF
EVFVGDVTTHHLHNLKPGTTYDLKVLAQYNTGFSAPLIGQGTTLYLNVTDVTTYNVGYDS
FCIRWAPHRAATSYRLKVNPFDTSKRGAQEITVRGSESSYCFDGLTPDTLYNATVYTQTP
NLEGPGVSIKERTLVKPTEVPTEPPTPPAPATVPPALEVCKGAKADLVFLIDGSWSIGDE
SFNKVIQFVTSMTGAFDVISPSGMQVSFVQYSDDAKTEFKLNTYHDKGIVLSALQTVRYR
GGNTKTGIALKHVHEKVFTSDSGMRRNVPKVLVVVTDGRSQDDVKKSAEKLQHSGYSVFV
VGVADVDMTELRNIGSKPSERHVFVVDDYDAFAKIQDNLITFICETATSTCPLIYIDGFT
TPGFRMLEAFNITDRTFAGMNGVSMEPGSFNSYIAYRLHKDSFLNQPTKEIHPEGLPPSY
TIILLFRLLPDTTSEPFDIWQIADKNNNPEVGLNVNPSSKTITFYNKDTRGEIQRATFNE
EQVKRVFHGSFHKLHITISPEKVKLNVDCQEVAEKTIKEANNITLDGYEVLGKLVKSGGR
RESATFQLQMFDIICSLSWISRDRCCDLPATRDEAKCPSLPHSCTCTQDSIGPEGPPGPT
GSPGSKGPRGDRGESGNTGPMGPRGEPGLPGAMGPPGPQGPNGLSLPGEPGRPGPKGDPG
DSGLPGLQGPPGPRGPLGPVGPSGARGPPGKEGQSGPRGPPGPMGSPGNPGVPGITGKPG
KPGDTGNPGPVGLKGEKGERGDFASQNMMRSIARQVCEQLVNSQMSRIDMMLNQIPSGYR
SNSPGPPGPPGPPGNQGSRGEPGQTGRTGFPGGPGLPGSQGERGLPGEKGERGSPGTGMR
GQRGANGPPGPPGDSRTGPPGPSGSAGPRGPQGRQGTPGVRGPSGPPGYCDSSQCVGIPY
NGQGYTASRYQPDPEVVSIPVEPADEFETIQSPGYSRNQRGKRSLPRDNTDTLAS
NT seq
9348 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaggctgtcactggccgtggctgccctccttgcagtcttgttatcctccata
gatgcccaagtggaaccaccctcagacttgaaatttaaaattttaaatgagaacacagtg
gaaatgtcatggacaataccctcatcgaggatagagggcttcagaatacaagttatgtca
gatgcagatgaaccggttagagacttgacccttgaggcgtatgtcaccatgacctcaatc
actgacctgacccctgacttggactattcagtgtccataaactccttttttgggtcagaa
gagagcattcccatctttgggcaactgaccatccagtccagtaacaccagtgaacgagtc
aggaggccacagtccgatgcaatcaagtgttcggtcagtgcaatagcagatttggttttt
ctggtggatggctcatggagtgtgggcagagaaaacttcaagcacatccgcagtttcatc
agctccctggcaggggccttcgatattggcgaggacaagacccgggtggccgtggttcag
tacagcacagacacccgcacagagtttcctcttacccgttacaacagaaggggagacctg
ctccaagccatcaactccctgccatacaagggtggaaatacaatgaccggtgatgccata
cattacctgctgagaaacatcttcacagaaggagctggatccagaaaagcttttccaaag
gtagccatgatcatcactgatggaaaatcccaggacccagtggaagagcatgctaaaaga
cttaggaacattggagtggaaatatttgtcctaggtatcaaaggcgcagatgaggatgag
ctaagggatatggcctccacaccttacaataaacatgtgtacaatgttcccaactttgac
ctgatccaagaggtacagaaaaagatcatccaagaggtttgctccggtgttgatgaccag
ctcagctctctggtcagcggagaagaaatggtggagccagcctctaacctccaggtcaca
gaaattgcatctaagtcaatgagagtgacatgggatgcatccctaggcgatatcacaggc
tacaagctcactctcaatcccatgttacctggaatgaaacgtcaggagctatacatggga
gccactcaaacatccatcaatgtccgtgacctttcccctgagactgagtatgagatcaac
ttgtatgccctcaagggtctgactcccagtgagcccacaattgcattggagaagacccag
cctgtcaaggtttcaacagagtgctctttgggagtggatgtgcaggctgatgtggtccta
ctggttgatggctcgtacagtattggattacaaaactttgctaaagtccgtgccttcttg
gaggttctggtcaattcatttgacattggccccagcaaggtccagattagcttggtccag
tacagtcgtgatccacacaccgagtttgccctcaacacccaccatgatattaatgctgtt
gtcaaagctgtgcgcacgttcccctaccgtggaggctccactaacactggcaaggccatg
gcctatgtcagggagaagatctttatccctgcccgtggagcaagacaaaatgttccccgt
gtcatggtcctgatcacagatggaaagtcatcagactcttttaaggatgcagccaccaac
ctgaggaatattgatgtggagatctttgccgttggtgtgaaggatgcagtaaggtctgaa
ttggaggccattgctaatcccccagcagacactcatgtctatgaggtggaggactttgat
gctttccagaggatttccaaggagctgacccaatccatctgtctgaggattgaacaggag
ctactcaacatcaaaaagagaagtctgcttccacccagagacttgcagttctctgaaatt
acctccagaagtttccgtaccacgtggactgcccctactaccagtgtcatgtcttacctt
gtgcgtttccgcaaggctgaagatgtcactggagactacatttctctggcagtacctggt
gacaccaccacagctgttctgccccacctttatcccctcactgcctacgaagtcaacgtc
tttgctcagtacgaaaaaggagacagtttccctttgactggtgaagagaccactcttgaa
gtgcaagggactgtacgaaacctacgagttacagaggagacaataaacagttttagggtg
tcatggcaagctgctccaggttcggtgatcaggtatcgcctgtcctacgttccactgaat
ggtgctggggagacactggaggcacagaccattggaccagagactaccatagttctccag
gagcttttccccattaccacctaccgtgtgtctgtgtctgctgagtacgctactggcata
gggaaggagatgcaggtcgatggtaccactaaggaagcccgtggcactcctcgcgacctt
cgtgtctttgacgagaccgtatctacaatgaaactggcatggcaggctgctccaggaaat
gtccttcagtaccgcattgccttcaaacctgctgatggtggtgagaggaaggagatatct
gtcaaaggagatactacccaagctgtcctgaagaacctccaaccagccactgaatatgag
ctgtttgttagtgctcgctattcttctggtctgggtgatcctcttctgggcacaggaaca
accttagaagagcttggttcacccagagacttggtgaccaaagatatcaccgacaccagt
tttgctgtgtcttggactgcggcccctggtaacgttcgtcagtactggatcaggtggaag
tctcttttcactgaagaggctggggaaaagacaataccaggagacaccactgccacggtt
ctggagggtctcaccccagagacacgctatcaggtctctgtgtttgctggctatggccgt
ggagagggccagccactggtcggagaagaaaccacagatgtctcagctgctggaagagca
attgttgtctcagaggagacagagaaaagcatgaaggtgacatggcaggcggcacctgga
aatgtgctcaactaccgcgttacctacaaaccccaggctggagggcgccagctagcagct
aaggtggctggtggcactacttccactgtgctaaggcgccttactcccctcaccacctat
gacatcactgttctgccagtctatcgttctggagagggcaaagcaaggcaaggagtagga
acaacattgtcacctttcaaaggtcctaggaacctacacacttcagagcctaccaagacc
agcttccgtgtaacttgggaccatgctcctggtgatgttaggggttacaaagtcactttc
caccctgtaggggatgacattgacctgggagaacttcgggttggaccttatgataatact
gttgtcctagaggagctgagagctggtaccaaatactcagtgaatgtgtttggtatgttt
gatggaggagagagtatgccattggctggagaggagaaaaccactcttagtgatggacct
gagcctccaccttttgagacaccagatgtgatgtgtaagaccactgcgcaggctgacatt
gtgctgctggtggacggctcgtggagtattggacgtctcaacttcaagaccattcgtgcc
tttatcgcccgaatggtgggagtctttgacattggccccgaaagggtccaaattggtctt
gctcagtacagcggagaccccaagactgaatggtacttggatgctcatagaacccgggag
tcactcctagaggctgtggctaacctgccctacaaaggcggcaacaccttgaccggtctg
gctttgaactacatcctccagaacaatttcaaagagaatgttgggatgcgacccaactct
cgaaagatcggtgtgttgatcactgatggcaaatcccaggacgatgttattgtcaactct
cagaacctgcgtgatcagggcattgagttgtatgccattggtgtgaagaatgctgatgag
aatgagttgaggtcaattgcctctgatccagatgatattcacatgtacaacgtggctgac
ttctccttcctgttggacattgtggacaatcttactgacaacctctgtaacagtgtcaag
ggaccaggaggtgcagcagatgctcccaccaatctagtgacatcagagattactcaccac
tccttcagagccacgtggactgctcctgaaggccccgtggagaagtaccttgtggagtac
atgactttgtcaggactcccacaacaggtgttcgtggatggtactgagaacacggtggtt
ctccagaaactcttccctctgacaaagtacctggtcagcgtctactccgtggtgggagag
gagaatagtgagcctcttaaaggaaccgagaccacactgcccctgagtgccgtgaggcgg
atggacgtttatgatgaacagaccaccaccatgcgggtgaggtgggaggaggtcgatggt
gctaatggctacatgctgctctacaacaccatgaatgccactgagcccaccctggagcag
gagatcagagtgggaggagatacaactgatgtccagctggtgaagctactccccaacacg
gcctacatgctttccctcttcgccctgcatggagaatcagctagtggaccattgaccaat
cagggagtcaccctgcccctgccacctgcaggcgaactcagggttcgtgatgtcacccac
agcaccatgaggcttatatgggatgctgctcctggtcctgttcgcaaatacctcatcacc
tacaagcctgtggatggagaagctaaagagctggaagtgggaggaagtgtgactgacaga
caactggacaacctgatctcacagactgagtatggtttagctgttactccaatctatgac
gggggaactggacagccaatgttgggagaggcaatcactggtgtggttcctgccccaaag
agcctacgattctcagaagttacccagaccagcttcagagccagctgggagcacggagcc
cctgatgttgctctgtaccgcattggctggactaagaagggagagaccagcctcgaatat
gccattgtgaacagtgatgagacaacccacctcctggagaacttagagccagacacaccc
tatgatgtgtctatcactgcaatctatccagatgaatcagagagcgaggatctgctgggc
actgagaggacattgtccaggcaaggtggtaggccaacacctaatgcacctcccaccgac
ttggttgtgttcaacgaaaccaccaccagtctgaacgccaggtggaatccagctccaggt
cgcgtccagaactacaggatcacttatgtccccacatctgggggcaggagccagactacc
caggttggagggaagaagaatactgtcctgcttcccaagctgacccctgacactgaatac
actataactgtggtggctgtctatgcccgcggagtcagcagagagcttaacggccttgga
aagaccaagcctttgggtggtgttaggaacctgcaggttattgaccccaccactagcacc
ctgaatgtccaatgggaggctgctgagggcatcgtgcgccagtacagggtcttttatgtt
cctgcagctggaggagatgaagagatggtgcaagtatcaggcagcacctacaacactgtg
ctgaagaacctgcagtctgatactgtctacactgtaactttggttcctgtctactctgct
ggagagggacaacgcatgtctgagaatggcaaaacattggagcgtagccctgtcaggaac
atccaggttttcaacccctctaccaacagtctgaacgttcgctgggacgctgccacaggc
ccagtccagatgtaccgcgtgatctatacacctcagactggcactaggccctctgagtcg
cttgtggtaccagggaccaccaccacagccttgctgcaaccgctgctcccagatactgaa
tacaacattggagtggtcgccttgtacagcgatggcgaaggacccactatcactgataat
ggaaagacaattccccgtagtggtccaaggaacatgcgtgtgtacgaccccaccaccact
actctctctgtgagctgggaacatgctgaaggtcctgtcatgcaataccgcatcacctat
gcccagaccataggagatcccatcgaggaatacactacagtaccaggaaacagaaacgat
gtgatcctgcagaacctggatccagatacaccgtataatatcaaagtgactgcgatctat
gctgatggaccaggaggagtgctagagggagatggacgcacagtgggtatgctcggccca
aggaacctccgtgtttctgatgagtggtacacccgcttcagggtggcctgggaccccgcc
ccctccagggttaacggatacaagcttatctaccagcctgagggctctgatgagtcgttc
gaggtgtttgtcggagatgtgaccacccatcacctgcataacctgaaacctggaaccacc
tatgacctgaaagtgctggcacagtacaacacaggcttcagtgcacctttgattggacaa
ggcaccacattgtacctgaatgtgacagacgtgaccacctacaatgtaggctatgactct
ttctgcatccgatgggcccctcacagagcagctacctcctacagactcaaagtcaatcct
ttcgacacctccaagagaggagctcaggagatcactgtcagaggctcggagagcagctac
tgctttgatggcttgacccctgacactctctacaatgccactgtgtacacccaaaccccc
aaccttgagggacctggagtgagcatcaaggagaggacattggtcaaacccacagaggtg
ccaaccgagcctccaaccccccctgctccagcaacagtcccccctgcgctagaagtgtgc
aaaggtgccaaagcggacctggtcttcctcattgatggctcctggagtattggagacgag
agcttcaataaggtcatccagtttgtcacgagcatgactggagcctttgatgttatcagt
cccagcggcatgcaggtctcatttgtgcagtacagtgatgatgccaagacagagttcaaa
ctgaacacctaccatgacaagggcatagtgttgtcagctttgcagactgtccgctacaga
ggaggaaacaccaagacaggcattgctctcaagcacgtgcatgagaaggtgttcacctca
gacagtggcatgaggaggaacgtcccgaaggtgctggtggtggtcacagatggacgctcc
caggatgacgtcaagaagagtgcagagaaactgcagcattctggttacagcgtgtttgtg
gttggagtggccgatgttgacatgacagagctgagaaatatcggcagcaaacccagtgag
agacatgtgttcgtagtagacgactatgacgcctttgccaagatccaggacaacctgatc
acctttatctgtgaaacagccacttccacttgccctctgatctacatcgatggattcacc
acgcctggcttcaggatgctggaggctttcaacatcacagaccggacattcgctggcatg
aatggtgtgtccatggagccgggctccttcaacagctacattgcctacaggctgcacaag
gattccttcctgaaccagcccaccaaggagatacatccggagggtcttcccccatcttac
accattatcctgctcttccgcctgctgcctgacacgacctctgagcctttcgatatctgg
cagattgcagacaaaaacaacaaccccgaggtcgggctcaacgtcaacccttcgagcaaa
accatcacgttctacaacaaggacacccgaggagagatccagagggccacgtttaatgag
gagcaagtgaagagggttttccatgggagcttccacaagctccacatcaccatctctcca
gagaaagtcaagctcaatgtggactgtcaagaggtggctgagaagaccatcaaggaggcc
aacaacatcacactggacggttatgaagtgcttggcaagttggtcaagtctggaggaagg
agggagtctgcaacattccagctccagatgttcgatattatctgcagcttgagctggatc
agccgagacagatgctgcgaccttcccgccacaagagatgaggccaagtgcccatccctt
ccccactcgtgcacatgcacacaggacagtatcggccctgagggtccccctggacctacg
ggcagcccaggttctaagggaccacgaggagatagaggagaatccggcaacactggtcca
atgggtccacgcggtgagccaggactcccaggtgcaatgggaccaccaggtccacaaggc
cctaacggactgtctctacctggagaacctggtcgcccgggaccaaagggagatcctgga
gactcgggcctgcctggtctgcaaggtcctcctgggccacgtggtcctctgggccccgtt
gggccaagcggagcgcgggggccaccgggaaaggagggacaatctggacccagaggccca
ccagggcccatgggaagccctggaaatccaggtgtaccaggaattactgggaaaccaggg
aaaccaggagacacaggaaacccaggacctgttggccttaaaggagagaaaggagagagg
ggagactttgcatcccagaacatgatgcgctccattgccagacaagtctgtgaacagctt
gtgaacagtcaaatgagcagaattgacatgatgctcaaccagattccttcaggatatcgt
agcaacagtccggggccacccggtcctcctggtccccccggcaaccagggatcccgcgga
gagcctgggcaaacgggtcgaactggtttccctggaggcccaggtttacctggaagtcaa
ggagaaagaggtttgccaggagagaagggagagaggggttctccaggaactggtatgaga
ggacaaagaggcgccaatgggccaccagggccaccaggcgattctagaacgggacctcca
ggtccctctggctccgctgggccccgtggccctcaaggtcgccagggtactcctggggtg
aggggaccatcaggaccccctggatactgcgactcttctcagtgtgttggcattccttac
aatggacaaggatacacagccagccgctaccagcctgaccctgaggtagtctctatacct
gtggagccagctgacgagtttgagacaatacaatcacccggttactcacgaaaccaacga
ggaaagagatcactaccaagagacaatacagacacactagcatcatag
DBGET
integrated database retrieval system
