Xiphias gladius (swordfish): 120801312
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Entry
120801312 CDS
T07311
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120801312
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120801312
09142 Cell motility
04820 Cytoskeleton in muscle cells
120801312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120801312
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120801312
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120801312
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120801312
Hyaluronan
Extracellular matrix or blood plasma proteins
120801312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
ACP_PD
Motif
Other DBs
NCBI-GeneID:
120801312
NCBI-ProteinID:
XP_040004072
LinkDB
All DBs
Position
LG16:complement(3801031..3883491)
Genome browser
AA seq
2756 aa
AA seq
DB search
MRRHRLLPLCALLGVLFTGLLPKLDAQEVLTVGNRDIIFLIDSTMGATLINSVREFIKRF
VDTMPIGPDEVQVGVAQFSNVPRLEMDLNSHGSRDALTAALGSIKPRPGQTVNIGAALDF
VRTNMLQPEKGSRIQQGIPQLLLLMTSKKSNDSVQDPAKALQRMGVLTLAAGSKAADEQE
LKEIAFADSFVFMLRDFRALLRNPKAVVVALSTLAGVVVTEVPTEPVVEITTVQTQKVIR
DIVFLVDGSNYIGSTNLPYVRDFIINVVNQLDVRPDRVQIGLLQFAENPKIEFYLNSYQS
RQDVVNKISQLRLTGGSVLNTGAAMKHALTNMFVQSAGSRRSQGVQQVLVLITGGPTQDE
VKTVADQLALDGVLTFTVSSGQADDALMKTVAFVSKLAYHDRSFSNLPAMAEVIMPQLIT
VVGTTDVTSVPEKPVAVPGAERDVAFLIDGTDNVRADFGYIRDFIMKVIEPLDIGIDRVR
ISVVQHSERPTPSFYLNTYQTKDEVIRAVSEMTLAGGRSLNTGLALRFMKDTILSERHGS
RAAQNVPQFLIVLTGGRAMDNVKEPAGALKTEGVVPFGVGVKDADPKQIEAISHNPSFAF
NVKEFRDLSTVPQRLNNYVSLPREELDIILQQAELQGPWKDVVFLVDGSDGVGLEFPIIQ
EFIRRVVESLNVGENKIRIGVVQYGDFAQVDMYLNSYTTKEGVMNAVREMRQRGGRQRNL
GQALQFVSQDVLTAERGSRKQEGVPQFLIVVSSGSSTDDISRAASSLKQSRVLPFSIGTR
DVKPTELRVVSYVPNFAFTVDDLPGLYTVQENLITALTELSEDDIARMRPAFPTYDVIQP
APAGGEKRDVVFLIDGTTAVRSEFPSIREMIRRVVEKLDVGLDKVRVSVVQYSDDPKLEF
LLNQFSTKDEVRQAVMKLRSNGGNHLNTGRALEWVSRNIYQRSAGSRIEDGVPQFLILVT
GGKSTDDVYTPAVQLKRNQVAPLAIGSRNADPDELKLISLKPELVYTVDSFQQLPRVESQ
LIDSVKTISTTDIISSYVPSTVDPINYERKDIIFLIDGSDNTGAAGIAHIRDFILNIVQQ
LNVQPDQVRVAVVQYADKVKTEFSLNSHNNKPAVISAIKRLRQMGGRSSDLADAINYVMR
NELKSSAGVRLAEASQHLVVLTGGRSPQDVSIYGPLLKGSRVNCIGIGAGGADTRQLNQI
ARTSEDVLQVTTFPDLPTIKERFIARLRGTILEEPTNVYEDPSLPPPKKADIVFLVDGSI
NLGRENFSEVMSFIINLIDLFFNERDNLRIGLAHYAADVTDVFYLNTYKHKQDIVSAIAR
EEYKGGRKISTGAAIRHVQDVHFTKEKGSRVDEGTPQILMVITGGRSADDSKTAALGLKK
KGVRVFAVGVGDIENELENLASESSTVARASNFQELSELNEQILETLDDEVKGKLCVGVQ
ESQKTCSVEVLVGFDVSDQNIFSAQTNLQSKMGAILQRISKMAAISCSSGQIPSVQVGML
AMDSASEPVQMDFTDNADELFEAFRVLRNRGPFVLNGKTISAYTNRFKTRQDSVVKVVIH
LTDGLDAPYAEMKKQVRNLQLSGVNSFILVGLERVPKFEEALLLEYGRGFRYTRPLRVNI
MDLDYELTEELDNIAERECCAVPCKCTGTRGDRGAIGLPGSKGSPGSPGSPGHPGDEGGP
GERGPPGVNGTQGFQGCPGQRGVKGSRGYSGEKGEFGEIGLDGINGEEGKSGVAGPPGDR
GNPGRRGPKGAKGQAGDRGEIGIRGDPGTSGQDNNQAGPKGDPGDAGSVGEPGDDGEKGG
PGVVGRRGADGRRGTPGKAGNPGKPGADGVQGEPGIGGSRGQPGPNGAPGPRGEDGNPGP
RGPGGKPGPTGDKGRRGALGRKGEPGEPGPKGVIGPLGPRGEPGEDGRDGFGVIGPKGRQ
GDEGFPGFPGPKGTAGDPGNKGGPGLRGNRGQRGVSGNIGTPGQKGEVGYPGSYGQKGPR
GPGVVQCDLIKKIRENCPCCYGHKECPLYPTELAFALDASQDIDLRAFNNMRDTVLRLVR
DITITESNCPRGARVALTLYNNEVTTEVRFADAMKKRALVQHIEGLQTLQTNKKRSLDMA
MSFVAQNTFKRVRSGFLVRKVAIFFVGGPLSQAQTVTNAALRLHDAGIATLFLVSREEKA
LSRTLQVNNTALAQVIVLPSPGSAEYNSVIQKVMNCHICLDFCSPDQMCDYVPPSASRDR
RSFITDVEIDMAFVLDSSESTYPTVFTEIKRYIAQIVEQLQVSSNPTSSVHHARVSVIQQ
APYEFLHNKSGSPIHVDIGLTDHHSSQDIVRFLLEKTLQLEGGRALAAAIESTVELVFEK
APLPRDRKVLMLFVTGSVEEEEEQLVRIATEVKCRGFFLVILGVGERLTAGDTRVLSLMA
SEPSDVFFKRLDSISHFYDKRIQTFSQLLPKYISSENAFYMSPEVSKNCKWFQSDQALKN
PFTTSQQQEKHQKHHENHQAVHRRKHKNAGELHISNVTSSSLKLRWSNPDPKLFVYFEVV
VTRLPDHAQVLKTNVSGTELSVDNLQSTQTYHAVVTARTAEGQIVSTRKGIITTKATEHK
PASQDTSTVKTTPLDKPETVNEFADPCSLDYDPGMPCKDYQSKWFFDRKHGICAQFWYGG
CGGNENRFNTETLCLQNCRRSVPEPEPKVQQGEQVEILPAPAASKAVDICQLPKEEGTCA
KFVLKWHYDAPSKSCTRFWYGGCGGNQNRFDTHEQCMKGCGKPAPVNRGVIAAIRT
NT seq
8271 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggcatcggttgttaccgctgtgtgcccttctgggtgtcctgtttacaggactc
ctccctaaacttgatgctcaggaagtcttgacagttggaaatcgagacatcattttccta
atcgacagtacaatgggtgcaacactcatcaactccgtgcgtgaattcatcaagcggttt
gttgacactatgccaattggtccagatgaagttcaagtgggtgtggcccagttcagcaat
gtccctcgacttgagatggatctcaactcccatggatccagggatgctttgactgctgct
ttgggctctatcaaaccaagacctggacagacagtcaatattggagcagccttggacttt
gtgcggacgaatatgctgcagcctgagaagggaagtcgtattcaacaggggataccccag
cttttactgttgatgaccagtaaaaagtcaaatgacagtgtgcaagaccctgctaaggcc
ctgcagcgaatgggtgtattgactctggctgcaggctccaaggctgctgatgagcaggag
ctgaaagaaattgcctttgctgacagttttgtgttcatgctgagggacttccgcgcactg
ctacgcaacccaaaggcagttgttgttgcgctctccactctagctggggtggtggtgact
gaagtacccaccgagccagtggtggagataacaacagtgcagactcaaaaagtgatccga
gacattgtcttccttgtggatggctcgaactacattggcagtactaacttaccctatgtg
agagacttcattatcaacgtggtcaaccagctagatgtacgtcctgacagggtccagatt
ggtctactgcagtttgcggaaaatccaaaaattgaattttatttgaacagctaccaaagc
aggcaagatgttgtgaataaaatctctcaactcaggctgactggaggctcagttttgaat
acaggagctgccatgaaacatgccctcaccaatatgttcgtgcaatcagctgggtcacgc
aggagtcagggagtccagcaggtgttggttttgatcacaggtggtccaacccaggatgag
gttaaaacggtagctgatcagttggctctggatggggttttgaccttcacagtcagttct
gggcaggcagatgacgccctcatgaaaacagtcgcctttgtttcaaaattggcttaccat
gacagaagcttctctaacttaccagctatggctgaagtaatcatgccacagttgataaca
gttgttggtactacagatgtgacatcagtccctgaaaaacctgttgctgttcctggagct
gaaagggatgttgccttccttattgatggcacagacaatgttcgagcagattttggctac
attcgggattttatcatgaaagtaattgaaccgcttgacattgggattgacagggtacga
atttcagtggttcagcacagtgagagaccaactccaagtttctaccttaacacttaccaa
accaaagatgaggtgataagagctgtcagtgagatgacactggctggtggacgtagtcta
aacacaggattggctctaagattcatgaaggacaccatcttgtctgaaaggcatggtagt
cgggctgcgcaaaacgtccctcagtttctgatcgttttgactggaggcagagccatggat
aatgtgaaggagcctgctggtgcgctgaagacagagggagtcgtaccatttggtgttggt
gtcaaggatgcagacccaaagcagattgaggccatttcacacaacccttcctttgccttc
aatgtgaaagaattcagagatcttagcaccgtgccacaaaggctcaataactatgtgagc
cttccaagggaagagctagacatcatcctacaacaagctgagttgcagggcccctggaag
gatgttgttttccttgttgatggatctgatggtgttggactggaatttcctatcatccag
gagttcatccgtagggtcgtggagagtctcaacgtgggcgagaataagatccggattggc
gtagtccagtacggtgactttgctcaggttgacatgtatctgaactcgtatacaaccaaa
gaaggtgtaatgaatgctgtaagggaaatgaggcagcgaggaggaagacagcgtaacctg
ggtcaggctttacagtttgtcagtcaggatgttctgacagcagaacgtggaagcaggaag
caagagggtgtaccacagtttctgattgtcgtctccagtgggtcttctacagatgacatc
agtcgtgcagcgtcttccctcaaacaatccagagttcttcccttcagcattgggacgagg
gatgtcaagcctacagagctccgggtggtgtcatatgtgcctaactttgccttcactgta
gatgacctccctggcctgtacacagtccaagaaaatttaatcactgctctcactgagcta
tcagaggatgacattgccaggatgcgtccagcattcccaacttatgatgtaatccaacca
gcacccgcaggaggagaaaagagggatgtcgtatttttaattgatggtacgacggcagtg
cgtagtgagttcccttccatccgtgaaatgataagaagagttgtggagaagctggatgta
ggattggataaggtccgagtttcagtggtacagtacagtgatgacccgaagttagagttt
cttctgaaccaattctccaccaaggatgaggtacgccaggctgtgatgaaactacgaagc
aatggtggaaaccacctaaacacaggtcgtgctcttgagtgggtctccagaaacatctat
cagaggtcagcgggaagccgcattgaagatggtgttcctcagttcctcattctagttaca
ggtggcaagtctacagatgatgtatatactccagctgtccaacttaagagaaaccaggtt
gcacctcttgccattggttcaaggaatgcagaccctgatgaactgaaactgatttctctg
aagcctgaacttgtatatacagttgacagtttccagcagcttccaagagtggagtcacag
ctcattgattcagtcaaaacaatatccaccactgatatcatcagtagttatgttccttca
acagtagaccccataaattatgagagaaaggacattatcttcctcattgatggctcagac
aataccggtgctgctggcattgctcatatccgtgacttcatcctcaacattgtccaacaa
cttaacgtgcagcctgatcaagtgcgtgtggctgttgtccagtatgcagacaaagttaaa
acagagttctcactcaactcacacaacaacaagccagctgttatctctgctatcaaaaga
cttcgtcagatgggtgggcggtcatcagacctggctgatgccattaactatgtcatgcgg
aatgagttaaaatcctctgctggtgttcgtctggctgaggcctcccagcatcttgtggtt
ctcacaggtggacgttccccccaagatgtttctatctatggacctttgcttaaaggctcc
cgggtaaactgcatcggtattggagcaggtggtgctgacacaaggcaactaaaccaaatt
gccagaacctcagaggatgtccttcaggttactacattccctgacctcccaacaatcaaa
gagaggtttattgccaggttgaggggtactatccttgaggaaccaaccaacgtctatgag
gatcctagcctgcctccacctaaaaaggctgatatagtatttttggtggatggctccatt
aacttgggccgggaaaacttcagtgaagtgatgtcatttatcatcaacctaattgacctt
ttcttcaacgagagagacaacctgcggattggcctggcacattatgcagcagatgtgact
gatgtcttctacctcaacacatacaagcacaagcaagacattgtaagcgccattgcacga
gaagagtacaaaggtggccgtaaaatcagcactggtgcagccattcgtcatgttcaagat
gttcactttaccaaagaaaaaggcagtagggtggatgagggcactccccagatcctaatg
gttatcactggaggacgctcagctgatgacagcaaaacagcagcccttggcctgaagaaa
aaaggtgtgagagtctttgctgtaggagtgggtgacattgagaatgagttagaaaaccta
gcaagcgagtcttccactgttgctcgagcaagcaactttcaggaactttccgagcttaat
gagcaaatcctggagactttggatgatgaagtgaaggggaagctgtgtgttggtgtgcaa
gaatctcaaaaaacctgcagcgtagaggtgttggtgggctttgatgtttctgatcagaac
atcttcagtgctcagaccaacctccagagcaagatgggtgccattctgcagaggatttcc
aaaatggcagctatcagttgctcatctgggcagattccctctgtacaagtgggtatgctg
gccatggactctgcctctgagcctgtccaaatggactttacagacaatgcggatgagctc
tttgaggccttcagagtcctgcggaatcgtggcccctttgtcctcaatggcaagaccatc
tcagcttacaccaacaggttcaaaaccagacaggacagtgtggtcaaggttgtcattcat
ttgactgatggtcttgatgccccatatgctgaaatgaaaaagcaagttagaaatcttcaa
ctgtcaggagtaaacagtttcattctggtcgggctggagagggtgccgaaattcgaggag
gctttgctgctggaatatgggcgtggcttcaggtacaccagacccttacgagttaatatc
atggacttggactatgagcttacggaagaactggacaacattgcagaaagagagtgctgt
gcagtgccttgcaaatgtaccggcaccagaggagaccgaggagcaattggacttccaggg
tctaagggtagtccaggatcaccaggaagcccaggacatccaggagatgagggtggacct
ggagagagaggtcctcctggtgtgaatggaacacagggtttccagggatgtcctggacag
agaggtgttaagggttctcgtgggtactcaggagaaaagggtgaatttggagaaattggg
cttgatggcataaacggagaagagggcaaaagtggagtggctggacccccaggagacaga
ggaaaccctggcagaagaggtcccaaaggtgccaaaggacaagcaggagacagaggagaa
ataggaatcagaggagaccctggtacaagcggacaagataacaaccaggcaggacctaaa
ggagaccctggtgatgctggatcagtgggagaacctggtgacgatggagagaagggaggc
cctggtgtagtcggaagaaggggagctgatggcagaagaggcacacctggaaaggctggg
aatcccgggaagccaggagctgatggtgtgcagggagagcctggtattggaggatctaga
ggtcaacctggacctaatggtgccccaggaccaagaggagaagatgggaaccctggaccc
aggggtcctggaggtaaaccaggtcccactggggataagggcagaagaggagctcttggt
cgtaagggagaacccggagagccaggccctaagggtgttattggacctcttggcccccgt
ggagagcctggtgaagatggtagagatggctttggtgtcatagggcccaaaggaagacag
ggtgatgaaggcttccctggattcccaggaccaaagggaacagctggtgaccctggcaac
aagggcggacctggacttagaggaaatcgtggacagaggggtgtctctgggaacattggt
acacctggacagaaaggagaggttggatatcctgggtcatacggtcagaaagggccgaga
ggaccaggtgttgtgcaatgtgacctgatcaagaagattagagaaaactgtccttgctgt
tatggtcacaaggaatgcccactctacccgactgagctggcctttgccctggatgcctct
caggacattgaccttagagctttcaacaacatgcgtgacacagtcctgcgcctggtcaga
gacatcaccatcactgagagtaactgtccaagaggagctcgtgttgctttgaccctgtac
aacaatgaagttaccactgaggttcggttcgctgatgcaatgaaaaagcgtgctctggtg
cagcacattgagggactgcagaccctgcagacaaacaagaagcgcagcttggatatggcc
atgagctttgtggctcagaacaccttcaagagggtgcgcagtggcttcctagtgaggaag
gtggccatcttctttgttggtggcccactcagtcaggcacaaacagttaccaatgcagct
ctccgcctccatgatgctggcatcgccactctgtttttggtcagccgtgaggaaaaagca
ctcagcagaacactgcaggtcaacaacacagccctggcccaggtaattgtccttcccagt
cctggaagtgcagagtacaattcagtcatccaaaaggttatgaactgccatatctgccta
gacttctgctctccggaccagatgtgtgactatgtgcccccatctgccagccgagatagg
aggtctttcatcacagatgtggaaattgacatggctttcgtcttggacagctctgagtct
acctacccaaccgtctttactgagattaaacgctacatagcacagatagtagaacagcta
caagtgtcttcaaatccaacatcttccgttcaccacgcaagagtgtctgtgatccagcaa
gcaccttacgaattcctccacaacaaaagcggctctcccatccatgtggatatcggcttg
actgatcaccactcatctcaggatattgtcagattcctgctggagaagacactgcagtta
gagggtggccgagcactagcagctgccatcgaatcgacggtggagctggtgtttgagaag
gcacctctcccacgtgataggaaagtactaatgttgtttgtgacaggaagtgtggaagaa
gaagaggagcagctggtgcgtattgccactgaggtcaagtgcagaggattcttcctggtc
atcctgggtgtgggtgagaggttgactgcaggtgatactcgtgtcttgtcactcatggcc
agtgagccatcagacgtcttcttcaaaaggctggatagcatctcacacttttatgacaaa
cgcatccagactttcagccagctgctgccaaagtatatcagcagtgaaaatgctttctac
atgtcccctgaagtttctaaaaactgcaagtggttccagagtgaccaggcactaaaaaac
cctttcacaacatcacagcaacaggagaaacatcagaaacatcatgagaatcaccaagca
gttcatcgaagaaagcataaaaatgcaggtgagctacacatctctaacgtcacctccagc
agcttgaaattgcgttggagcaacccagaccccaaactcttcgtctattttgaagtagtg
gttacgcgtttgcctgaccatgctcaggtactgaagaccaacgtctcaggcactgagctt
tcagtggacaacttacaaagtactcagacatatcatgctgtggtcactgcccgcactgca
gagggtcaaattgtctccacccgcaaaggcatcatcactacaaaagcaacagagcataag
ccagccagtcaagacaccagtactgtaaaaaccacaccactggacaaaccagaaactgtt
aatgaatttgcagacccatgctcacttgactatgaccctggaatgccatgcaaagactat
cagtctaagtggttctttgacagaaagcacgggatctgtgcacagttctggtacggaggt
tgtggaggcaatgaaaataggttcaacactgagaccctctgcttgcaaaactgcaggagg
tcagtgccagagcctgagccaaaagtgcagcagggtgaacaggtggagatcctcccggct
cctgcggcctctaaagctgtggacatttgccagcttcccaaagaggaaggtacctgtgcc
aaatttgttctcaagtggcactacgatgcccccagcaagagctgtacacgtttctggtat
ggaggctgcggtggaaaccagaatcgcttcgacacacatgagcagtgtatgaagggctgt
ggaaaaccagcacccgtcaaccgaggagtcattgctgcaataagaacatag
DBGET
integrated database retrieval system
