Xiphias gladius (swordfish): 120806137
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Entry
120806137 CDS
T07311
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120806137 (rc3h2)
04121 Ubiquitin system [BR:
xgl04121
]
120806137 (rc3h2)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120806137 (rc3h2)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120806137 (rc3h2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
120806137
NCBI-ProteinID:
XP_040012853
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All DBs
Position
LG20:complement(11812162..11838871)
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AA seq
1169 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQAPDVQAVSLSSAAEVEHYEVCRVCVEELALYLKPISGAKAPQI
HCLITEVSPTAGVASLSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTE
LILQHQNPQQLSANLWAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQ
KLEARFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIV
HIAMEAGLRISPEQWSSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPA
NLTSLRPHLELLANIDHNPDAPVPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQP
QANSKYKTSMCRDLRQQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRAFPLAPGVMG
KTFTMEGSIHTDVSAGVGQGLKGTGENTATLIEGVPGLTHPQLISRGADMIEEMKRAVPN
GSSGANGSNGLSGANRTTSGSTEQKSISPPRTPVSHSSASSPLTTVGRADGGAPIPKHGQ
FMLRAPHPSQTSELYYQESHPAYDTAHYQQTSGSYYPSSLHPPHKPCMARFLRSSNVPES
SLPPSIGPPPTSYPSDPQTPHPPSSSSSGYPPHPPRDRMGPAFHPHPGQPQYGPLAPAHG
VYAPLYDSRRVWRPQLYHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGAEHRA
GLHRDYGRVPLGYEDLFRRKQEQWAHHHHHHNTNRPSQSSPIFTVDFGTEHVESSGGQCV
ECRFRGEESLAHYSPWSCGTIGPCLSPFEPETLTHTSAHSCSEHSELDSNGGGGGGVSSS
SVGKRWLHSLDHYRRLKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPVQATACQSGA
STTPINFKDYNPRLDHSDYRWSSRGSDSSSHSSFLESEQLCASELHGRRTSISSGEKIVS
DLQARQTAYSQDRNRAESEPDPDRDIELELCALDMEDSDHQEIKSQESLDLATPQSQDAS
HLLPPPCSSPLLSSPVEEQHQTEGLATDKMDAHLLKKMAFRKSLSPGGLVSGGLGVGKLV
LRTGPSRLGDTSTRACPETTGTEMLLNGS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagcccagtggacagagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagcctgggatgctcccacacggtatgtaagacc
tgcctacacaaactgcaccgcaaagcctgcccctttgatcagacaccaatcagcacggac
atcgacctgctgccggtcaactgcgccctgctgcagctggttggagctcaggccccagat
gtgcaggcagtgagcctgagtagtgcagcagaggtggagcactatgaggtctgcagggtg
tgtgtagaagagctggctctctacctaaaacctatcagcggagcaaaagctccgcagata
cactgtttgatcacagaggtatcgcctactgcaggtgtggcgagcctgagtcccagcgtg
ctcagtcggcctatgcagaggaagctggtgaccttggtgaactgtcagctggtggaggag
gaggggcgtgtgcgggcggtgcgggcaggccggtcgctgggggaacgaaccgtaaccgag
ctcatcctgcagcaccagaacccccagcagctctctgccaacctctgggcagcggtgagg
gcgcgaggatgccagttcctgggacctgctatgcaagaagacgcactgaagctggtttta
ctggctctggaggacggctcagctctgtccaggaaggtgttggttttgtttgtagtccag
aagctcgaggctcggtttccccaggcctccaaaaccagcataggccacgtggtgcagctg
ctctacagggcctcctgcttcaaggtgactaagcgcgatgaggactcctcactgatgcag
ctgaaggaagagtttcgtacatacgaggctctcaggagagaacacgatgcccagattgtc
cacatcgccatggaggcaggcctacggatctcacctgagcagtggtcttcgctgctgtac
ggagacctggtccacaagtcacatatgcagtccatcattgacaagttgcaatctccagag
tcgtttgcaaagagcgtccaggagctgacaatcgttctgcagaggacaggagacccggcc
aacctcaccagccttagaccgcacttagagctattagccaacatcgaccacaatccagat
gccccggtgccatcatgggaggagctggaaagtgtgatgctggctgtgaagttggtggtt
cacggactggtggaattcatacagaacttcagcaagaagagccacgacaccccacagcct
caggccaacagcaagtataagaccagcatgtgccgagaccttcgtcagcagggtggctgt
ccccgaggaaccaactgtacatttgcacacacacaggatgagctggagaaatttagactg
aggaacaagaagagcagcagtgtgggccgtgcatttccattagcacccggggttatgggc
aaaaccttcaccatggagggcagcatccacacagacgtgtctgcaggagtggggcagggg
ctcaaaggcacaggggagaatacagctaccctgatagaaggagttcctggcctgactcac
ccccagcttatctccagaggagccgacatgatagaggaaatgaagagagcggtgccaaat
gggtccagtggggctaacgggtccaacgggctatctggcgccaacagaaccacgtcaggt
tcaacggaacagaaatccatctctcctcccagaactccagtcagccactcctcggcgtcg
tctcccttgaccacagttggacgtgctgatggtggtgctcctatacccaaacatgggcag
ttcatgctgcgtgcaccacatccctcacaaacgtcagagctgtactatcaggagtcgcac
cctgcttatgacacggcccattatcaacaaacctcaggttcttactacccatcttctctt
catcctcctcacaaaccctgcatggctcgcttcctccgatcgtccaacgtcccagaatcc
tctctgccaccctctattggccctccaccaacttcctaccccagtgaccctcaaacgcca
cacccaccttcctcttcttcctcggggtaccctccacacccacctagagatcggatgggt
cctgccttccatccccacccagggcagccgcagtatgggcctctggctcctgctcacggg
gtttatgctcccctttatgacagcaggagagtatggaggcctcagctgtaccacagagag
gatgccaggagtaactcactgccaccagaggtgttgcattcctctgtctaccagcctcca
ctcagggagagattcaactctctagatagcaactactgctctggagctgaacaccgtgca
gggctacacagggattatggtcgtgttcctctgggctatgaggatctgttcaggaggaag
caggaacagtgggctcatcatcaccaccatcacaacaccaacagaccttctcagtcctcc
cccatcttcaccgtcgattttggaactgagcatgtggaaagcagcggaggccagtgcgtg
gagtgcaggttcagaggcgaggaaagtttagcgcactactctccgtggtcctgtggtacc
atcggcccctgcctcagcccctttgagcctgaaacactcacacacacttcagctcactcc
tgctcagagcactcggagttagacagtaatggaggcggaggtggtggcgttagcagtagt
agtgtcgggaagcggtggctgcattcgctggatcactaccgccgcctgaaagacgaggac
ccgatcattccctttagcgaggggcccattatctccaagtggggtgccatatccagggcg
tcacgcacgggctaccacaccactgaccctgtccaagccacagcctgccagagcggtgcc
agcaccacgcccatcaactttaaagattacaacccccgcttggatcacagtgactacagg
tggagctccagaggatcagactcctccagccactccagtttcctagagagtgagcagctt
tgtgcatcagagctgcacggccgtcgaacttcaataagcagtggagagaaaattgtttct
gatctgcaagcccgtcagaccgcctacagccaggatcggaaccgggctgagagcgaacca
gacccggaccgagacattgagctcgaactgtgtgctctggacatggaggactcagaccac
caggagatcaagtctcaggagtctttagacctggctaccccacagtctcaggatgcttcc
cacctcctcccgcctccctgctcctctcccctcctctcatcccctgtagaggagcagcac
caaacagagggtctcgcgacagacaagatggatgctcacctgctgaaaaagatggccttc
aggaagtctctttctcctggagggttggtctcaggaggtctgggcgtcggcaagctggtg
ctgcggactggaccgtctcgactgggggacacttccacccgggcttgtccagaaacaacc
gggacagagatgctgctcaacggaagctaa
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