Xiphophorus hellerii (green swordtail): 116707613 Help Entry 116707613         CDS       T07363                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06237   collagen type IV alpha Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe04510   Focal adhesion xhe04512   ECM-receptor interaction xhe04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:xhe00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116707613  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     116707613   09142 Cell motility    04820 Cytoskeleton in muscle cells     116707613  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:xhe04147]     116707613    00536 Glycosaminoglycan binding proteins [BR:xhe00536]     116707613 Exosome [BR:xhe04147]  Exosomal proteins   Exosomal proteins of other cancer cells    116707613 Glycosaminoglycan binding proteins [BR:xhe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116707613 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  116707613 NCBI-ProteinID:  XP_032400920 LinkDB All DBs Position 18:1629437..1658292 Genome browser AA seq 1674 aa AA seqDB search MASPAAARRKIPRLLVRLLVLGALLLLADGKLVCHCTGKSRCHCEGVKGQKGEAGYTGDP GLPGVMGFPGSEGHQGSPGEKGNPGNAGIVGIKGSRGPPGTPGFPGPPGLPGLPGHEGPM GQPGLPGCNGTKGEAGYRGVPGPSGPPGSRGAPGPQGMKGDSVVIPLSQEIKGAAGPQGP TGKKGQSGHGGEPGEPGRPGAHGLPGRRGSAGIEGEKGQEGSSPTSPGPQGGKGDRGPPG IPGKQGIKLFAEGPKELKGEPGEVGQKGFPGLPGEPGSLGAKGEKGDRGEPGSLGKPGKT GLLGELGQPGDPGEFGFIGPPGVDGAAGEKGDRGPPGPPGQTISNYISVKGQRGFPGPFG PAGFLGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGPPGLVVTGPPGLTGAP GPLGLQGEPGEPGIPNMDIIGQGVLGTTGSKGSRGPPGDKGAVGEKGQKGQVCIDCHFQA GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGEQGPRGPQGSPGAPGAPGEP GSNPRPGQKGEAGDQGDAGLRGKAGQHGYPGPPGPKGETGQKGNPGLQGSKGHRGLPGPS GARGVTGPPGPPGRSRPGCPGPMGPKGANGYMGDRGAPGPRGEKGSKGNIWNIPGEPGPK GSRGQPGETGPEGENGLLGLRGCTGPKGQKGNDSFSHKGNRGNAGSKGVKGSRGEPGFPC YGMKGRVGPPGPPGPVGQKGNRGFGLPGEAGKPGPRGQDACDGPPGDPGPPGRPGVQGPA GQNGCQGPKGHRGVDGEPGSTGPPGPCVPGCPGPPGLRGPAGPIGPTGTKGPPGLKGDPG THCPRVPGLRGPPAPPGPDGVPGLAGEVGPKGWRGNPGEPGGPGPRGDMGVPGPMGCPGN HGPPGTCGEPGPKGQRGRDGSRGSQGPPGEPGDKGGTGPKGFPTVIRTTGNPGDSGFPGP RGFTGEKGQGGPPGNRGPKGLDGKSGETGPPGCPGDPGRDGERGPCGFTGPPGDKGFTGR PGDPGEKGATGTNGLPGSDGGSGKPGDKGRKGEAGCGWGAKGCKGMKGIPGRPGPSGPKG PGGPAGDVGPLGPCGPCGFVGSKGPPGCKGSPGRAGEKGWDGPPGICGPPGPPGNPGCWG SPGAPGPLGPKGNQGRDGIPGPDGEKGDMGSCVPGPKGPTGRRGPPGCVGDRGPLGCCGP PGPCGPAGDPGYKGAKGPPGPPGCAGKKGGECIDGTKGYKGFPGPKGPKGPKGPSGPPGP PGPGYKGHKGVKGEPGPPGPPGPIGDLGPCGPPGPWGPPGYPGKKGYRGPVGAKGSIGME GEKGPPGNPGPGGPAGRIGNPGPSGKDSYFPVQLVSGDPGEEGALGQVGGVGSPGFPGLR GAYGSKGSSGAPGWTGTPGRDGLRGEDGERGRIGQKGANGERGRVGAKGPPGEPGEPSEP GAGPPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQ RFSTAPFLICETGEECRYAERNDFSYWLSNIRSPINQTDPEAALESKISKCSVCESEANV IAIHSQTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECS GSSGTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM NT seq 5025 nt NT seq  +upstreamnt  +downstreamnt atggcgtctccggcggctgcgaggcggaagatcccccgcctgctggtccggctgctggtc ctcggcgcgctgctgctgctggccgacggcaaactggtctgccactgcaccgggaagtcc cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacacaggagaccca ggacttcctggagtgatgggatttcctggaagcgaaggtcaccaagggtcaccaggagaa aagggtaaccccggaaacgcaggcattgtaggaattaagggctctcggggacctccagga acaccaggttttccaggacctccaggtctcccagggcttcctgggcacgaagggccaatg ggtcaacccgggctcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt cctggaccttcaggaccgccgggatcacggggggccccggggccacaaggcatgaaggga gactcggtcgtgattcccctcagtcaggaaataaaaggagcagcgggaccacaagggcca accggcaaaaaggggcaaagcggacatggaggagaaccgggcgaaccgggacggcccgga gcccatggacttcctggaagacgaggatctgcaggaattgaaggagaaaagggtcaggaa ggttccagtccgacgagtcccggtccgcagggagggaagggcgatcgcggccctccaggg atccccgggaagcagggcatcaaactcttcgctgaaggacccaaagagctgaagggcgag ccgggcgaagtggggcagaaaggtttccccggtcttcctggggagccggggagcctgggg gcgaaaggagagaagggtgacagaggagaacctggctcactgggaaaaccagggaagaca ggattactgggagaactgggacagccgggcgaccccggagagttcggcttcatcggcccg cccggcgtcgacggcgccgcgggagaaaaaggcgaccgagggcctccaggtcccccagga cagaccatctctaattacatatccgtgaagggccagcgaggtttccccgggccctttgga cccgccgggttcctcgggattcaaggtccgatcgggttcccgggactgaagggcgagtca ggcgaggcctccaacggaccgccaggttctcctggtccaactggctcagggggtcccaaa ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca ggacctcttggacttcagggagagccaggagagcctggaataccaaacatggacatcata ggacagggtgttcttggtacgacaggttcaaaaggctctcgaggccctccaggggacaaa ggggcggttggggaaaagggtcagaaagggcaggtttgtatagactgccattttcaggct ggtcctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgcg gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga gaacagggcccccggggcccccagggctccccgggggccccgggggctccaggcgagccg gggtcaaaccctcggccggggcagaagggggaggccggggaccagggcgatgcggggctg cggggaaaggcggggcagcacggatacccaggaccgccgggtcccaaaggcgaaacggga cagaaaggaaacccggggcttcaggggtcaaaaggtcaccggggcctgccgggcccctct ggtgccagaggagtgacggggccaccgggcccaccgggccgcagccgtcctggttgtcca ggaccgatggggcccaaaggagctaacggctacatgggagaccgtggagcaccgggcccc agaggagagaaaggctctaaggggaacatctggaacattccaggagaaccgggaccgaaa ggctccagaggacagccgggggaaaccggacctgaaggtgagaacggacttctgggtctc cgaggatgtactggtccaaaaggtcaaaagggcaatgacagtttctctcacaagggtaac cggggcaacgcggggtcaaaaggagtcaaggggtccagaggagagccagggttcccctgt tatggcatgaaggggcgagtggggccgcccggccccccagggcccgtcggccaaaagggg aacagaggttttgggctgccgggtgaggcgggtaaaccaggccctcgggggcaggatgcc tgtgacggacctccgggcgatccgggaccgccgggacggccaggagttcagggacctgca ggacaaaatggctgccaggggcccaaaggtcaccgaggcgttgatggggaacctggttcc acgggtccacctgggccctgtgtccccggatgtccaggacctccaggactgcgaggtcca gcgggtccaattggacccacaggaacgaaggggccgccgggtctgaagggagatcctggg acccactgccccagagtccccgggctcagagggccaccggcgccaccgggacccgatgga gttccagggctggccggggaagtgggacccaaaggctggagagggaatcccggagagcct ggaggcccagggccgagaggagacatgggtgttccagggccgatggggtgtcctggaaac cacggaccgcctgggacctgcggggaaccgggaccaaaaggtcagaggggtcgagatggt tcaagaggttctcagggacctccaggagagccaggggacaaagggggaactggaccaaaa gggttcccaacagtcattaggacaacggggaatcccggagactctggatttccaggaccc agaggtttcactggggaaaagggacaaggaggccccccagggaaccgagggccaaagggc ctggatggaaaatctggagagacggggccaccaggatgtcctggagatccaggtagagat ggagagagaggtccttgtggtttcactggacccccaggggacaagggattcactggtaga ccaggtgatccaggtgaaaaaggtgcaacgggaaccaatgggctccctggttcagatgga gggtcagggaaacccggagataagggacgtaaaggagaagcaggttgtggatggggagct aaaggctgtaaaggaatgaaggggattcctggacgtccaggaccttcaggtccaaaagga ccaggaggaccagctggagacgttggccctctggggccctgcggtccttgtggatttgtg ggatccaaagggccacctggatgcaaaggttctcctggtagagccggtgagaaaggttgg gacggcccgcctgggatctgtggccctccagggcctcctggaaatccaggatgctggggg tctcctggagctcctggtccactgggacccaaaggaaaccagggccgggacgggatcccc gggcctgacggagagaaaggagatatgggctcatgtgtacctggaccgaaggggccgaca ggacgaagaggtccccctggatgcgtgggggacaggggcccgctgggatgctgtgggcct cctggaccctgtggacctgcaggagacccgggttacaaaggcgctaagggacccccaggg cctcctggatgtgctgggaagaaagggggagagtgcattgatgggacaaagggatataaa ggatttcctggacctaaaggaccgaaaggccctaagggtccgtccggtccacctggtcca ccaggtcctggttacaaaggccataaaggtgttaaaggagaaccgggtcccccaggacca ccgggaccaatcggtgacctcggtccttgtggacctcctggtccttgggggccgcctgga tatcctggaaaaaaaggctacagaggaccggttggagcaaagggttcaatcggtatggaa ggggagaaaggaccgccaggtaaccccggtccgggaggaccagcaggacgaatcgggaac ccgggaccaagtgggaaggactcatattttcctgtgcagctggtatcaggagacccaggt gaagaaggagctctaggccaagtgggaggagtcggatcgccgggtttccctggattgagg ggagcttatggttcaaaaggctcatctggagcaccgggttggacaggaacacctgggcgc gacggactgagaggagaggatggagagagaggacgaatcggccagaaaggtgcgaatgga gagcgtggcagagtgggagccaagggtcctccaggtgagccaggtgaaccaagtgagcca ggcgccggcccgccacccaggaggaacggcttcctgttcagcagacacagccaggacagc gccgcccctgcctgcccggcccagtccacgctcatattcagaggatactcactgctcttc atcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcag cgtttcagcaccgctcccttcctgatctgtgagactggagaggaatgtcgatacgctgag aggaacgacttttcctactggctgtccaacatcaggagcccgataaaccagaccgaccca gaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaacgtg atcgccatccacagccagaccagcgccgtcccgccctgccctgcggactggcagtcgctc tggaccggattctcctttgtgatggaaacgggtgtaggcgccgagggctcgggtcagcct ctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagc ggcagctcaggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctg gaccctgacaacatgttcaggaggcccagcagctggatccttccagggaacaacccagac aacatcagccgctgcagagtctgcatgaagatcatgcagatgtga

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