Xiphophorus hellerii (green swordtail): 116708909
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Entry
116708909 CDS
T07363
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116708909 (dicer1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116708909 (dicer1)
microRNA pathway
RISC loading complex
116708909 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
116708909
NCBI-ProteinID:
XP_032402938
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All DBs
Position
19:7224630..7249363
Genome browser
AA seq
1883 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGSYQENAKRTVFLVNSVSSVIQQAAAVRTHSDLQVGEYSDWKEA
SAWSDQRWSQEISTNQVLVMTCHIFLHALRSQILPLSKINLVVFDDCHLAITEHPYCDIM
KLFEECTCGPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYTSQP
REVVLDCGPYVDRSGLSSRLQAELDEALLFLNDCNIPFSREDRDPTFISKQILSDCRAVL
LVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTTLRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPLERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
ETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKSFEEDLTTYKAIEKILRNKCSKSVEAGEFEADQSLDDDNL
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETGDGRFQSTLFLP
INSPLRVPVKGPIMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETNVPGRPGSTKRRQCYPKAIPECLQDSYALPEQTYFLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSSAQLDLITRMH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSDTLDMDFMFMEDIEKSEARTGIP
TTKYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATKAGVGVQTLPPDFR
YPNLDFGWKRSIDIKTFCPCPESCSEEDDCKHQNLTFLALPSSHQGPLPAPAEGPCTGNL
TNGTTVTEDGHRDEHLHQHDSCQGCVGSSEWKHDPTSVPAQMPLSSSPPQPSHECTSGRT
SHHSNEATSDCTRTAPSPDLTAGPRAADSPRNLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVRHAEVSCCVGFQEPVHILCVPQVSNC
NLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSSDRVDSEEAREELVSNGRSGN
DFDDEDRDDEGEDVDEDELMLKDEPKDDVNMEDDLEYYKEHIRFIDNMLLGSGAFGKKIS
ISGFGPPLSPAPGSSPSMDSSYDWKAPKKPAQHSEQAHCGSAAEEFDYSSWDAMCYLDPS
KAGEEDDFVVGFWNPSEENCGTELGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCG
ERAAQMFLCSLGLKVLPVQRGSHTALLVPAVLTPAVELMYGWLKIPPRCMLDHPDAERTL
QHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKH
LYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKFFKAISPELFHVIDDFVQFQLEK
DEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMR
PLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRI
AKSAAARRALRSLKANQPQVQTN
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtcacccctgctacttcacccatggggcccttctttggtttg
ccgtggcagcaggaggccatccatgacaacatttacacgcccaggaaatatcaggtcgaa
cttctcgaagcagctcttgaacgcaacactatcgtctgcttgaacacggactcagggaag
acctttattgcagtactcctaactaaagagctctcccaccaaatccgagggagctaccag
gaaaatgccaaaaggacagttttcctggttaattcagtgtcgtctgtaattcagcaagcg
gctgcagtcagaactcactcggacctccaggtgggggaatactcagactggaaggaggcg
tcagcttggtcggatcagagatggagtcaggagatatccacaaatcaggtcctggtgatg
acgtgccacatcttccttcatgctctgaggagtcagatcttacctctgtctaaaatcaac
ctggtggtgttcgacgattgtcacctggcgatcacagagcacccttactgtgacatcatg
aagctgtttgaggaatgcacttgtggaccacgaatactgggcctcactgcttctatcctc
aatgggaaatgtgacccatccgaactggagcagaagatccagaatctagaaagaatcctg
aaaagcaatgctgaaacggcgactgacctggtggtcctcgacaggtacacgtctcagccg
agggaagtggtgctggactgcggtccctacgtggacaggagcggcctttcatcccgtttg
caggcggagctggatgaagctctcctcttcctcaacgactgcaacatcccgttttccaga
gaggacagagatcccacattcatctccaaacagatcctgagcgactgccgagccgtgttg
ctggttctgggtccttggtgtgcagacaaggctgcaggtatcatggtgcgagagctgcag
aagtacatcaaacacgaacaggaggagctcaacagaaagttcctgctcttcaccgacacc
accctgaggaaggtgcatgctctgtgcgaggagcacttctcccccgcctccctggacctc
aagttcgtcacgccgaaggtgctgcgcttgcttgagatcctgcacgagtacaagccgctg
gagcgccagcagtttgagagtgtggagtggtacaacaaccgcaaccaggacaattacgtg
tcgtggagcgactcagaggatgaggacgaggacgaggaggtggaggccaaagagaggcca
gagaccaactttccctccccgttcaccaacatcctttgtgggatcatcttcgtggagcgg
cgctacacagctgtggttctgaaccgtctaatcaaagaggcagggaagcaggacccggag
ctggcttacatcagcagcaacttcatcaccggccacagcatcgggaagaaccagccgagg
aacaagcagatggaggtggagttcaggaagcaggaggaggttctcagaaagttcagagct
cacgaaaccaacctgctgattgccaccagcatcgtagaggaaggtgtggatattccaaag
tgcaaccttgtggtccgcttcgacctgcctacagagtacagatcctacgtccagtccaag
ggccgagcccgggcccccgtctccaattacatcatgctggccgattctgagaggacaaag
agcttcgaagaggatctaaccacctacaaggccatcgaaaagatcctgaggaataaatgc
tccaagtcggtggaggcgggggagtttgaggcagaccagagtctggacgacgataacctc
ctccctccatatgtcctgcggtctgaagacggaggcccacgggtcaccatcaacacggcc
atcggacacatcaacaggtattgcgctcggctgcccagtgacccgttcacacacctcgct
cccaaatgtaaaactgtggagacgggcgatggacgcttccagtccaccctcttcttaccc
ataaactctcctctgagagtccccgtcaagggtcccatcatgaactgcgcccggctggct
gagaaagctgttgcactgctctgctgtgaaaaactccataaaataggtgagctggacgac
cacctgatgcctgttgggaaagagacggtgaagtacgaggaggagctggaccttcatgat
gaggaggagaccaatgtcccgggtcgacctggctccaccaagaggaggcagtgctaccct
aaagccatacccgagtgtctgcaggacagctatgccctgccggagcagacctacttccta
tatgtgatcgggatggtccttaccacgccgctccccgatgagctgaacttccgcaggaga
aagctgtacccccctgaggacacgactcggtgcttcggcatcctgactgccaaacccata
cctcgaattcctcatttcccggtgtacacccgttctggtgaggtgaccatctccatcgag
ctgcagaagtcgggcttcacgctcagctcagcccagctggacctcatcacccgcatgcat
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaaacccacg
ctggctgactcagcttattgcgttctacctctgaatgttgttggagactctgacactctg
gatatggactttatgttcatggaggacattgagaagtctgaggcccgaacaggcattcct
accactaagtacaccaagcagaaccccttcaccttcaagctggaggactaccaggatgct
gtgatcattccaaggtatcgtaacttcgaccagccacatcgtttctacgtcgctgacgtc
tacaccgacctgacgccgctcagcaagttcccatcgccggagtacgagaccttcgccgag
tattacaaaacaaaatacaacctggacctgtccaacctgaaccagccgctgctggatgtc
gaccacacctcttccagactcaacctgttgactccccgacacctgaaccagaaagggaag
gctttgccactaagcagcgcagagaagaggaaggccaagtgggagagcctgcagaacaaa
cagattctggttccagagctgtgtgccatccatcccattcccgcctccctgtggaggaaa
gccgtgtgtctgcccagcatcctgtaccgcctccactgcctgctgacggccgaggagctg
cgagcccagactgccaccaaagctggagttggggtacagaccctcccccccgacttcagg
tatccaaacctggactttggctggaagagatccatcgacataaaaacgttctgcccttgt
cccgaatcctgcagtgaagaagacgattgtaagcaccaaaatctcaccttcttagcactt
cccagcagtcaccaggggcccctcccggcccctgcagaggggccctgcacggggaaccta
acaaacggcactaccgtgacggaagacggccacagagacgagcaccttcaccaacatgac
agttgccaaggctgcgttggcagctctgaatggaaacacgaccctacctcagttcctgcg
cagatgcccctcagctccagtcctcctcagcccagccatgaatgtacctcagggaggacc
tcacaccacagtaatgaagctacctcagactgcactcgtacagcaccttcccctgacctc
acagccgggccccgggccgcggactcacccaggaacctgggccccaaccccggcctcatc
cttcaggccttgactctgtccaatgccagcgacggcttcaacctggagcggcttgagatg
ctcggcgactcctttctgaagcacgccatcaccacctatctgttctgcacctaccccgac
gcacacgaagggaggctcagctacatgcgcagcaagaaggtgagacacgctgaggtcagc
tgctgtgttggattccaggaaccagttcacattctttgtgttccgcaggtgagcaactgt
aacctgtaccgtctggggaagaagaaagggcttcccagccggatggtggtgtccatcttt
gaccctccggtcaactggttgccgcctggatacgtggtgaaccaggacaagagcagctcg
gacagagtggactctgaggaggcgagagaggagctggtgtccaacgggcgatctgggaac
gactttgatgacgaggacagggacgacgagggtgaagacgtggacgaagacgagctgatg
ctgaaggacgaaccgaaggatgacgtcaacatggaggacgacttggaatactacaaggag
cacatccgtttcatcgacaacatgctgctggggtctggtgcgtttgggaagaagatctcc
atcagcggcttcggcccgccgctcagcccggctccaggctcctccccctccatggactcc
tcctatgattggaaggcccccaagaagcccgcccagcactctgaacaggcgcactgcggc
tcggcggccgaggagttcgactacagctcgtgggacgccatgtgctacctggaccccagc
aaggcgggcgaggaggacgactttgtggtgggattctggaacccgtcggaggagaactgc
ggcaccgagctcgggaagcagtccatctcctacgacctgcacacggagcagtgcatcgca
gacaagagcattgccgactgtgtggaggctctgctgggctgctacctgaccagctgtgga
gagcgggccgcccagatgttcctctgctcgctgggtctcaaggtgctgccggtgcagagg
gggtctcacacggcgctgctggtaccggctgttctgactccagccgtggagctgatgtac
ggctggctgaagatcccgccccgctgcatgctggaccatcctgacgcagagcgcacgctg
cagcacctcatctcggggttcgagaactttgagaggaaaatcaactacacgtttcagaac
aaggcttacctgctgcaggccttcacccacgcctcctaccattacaacaccatcacagat
tgctaccagcggctggagtttcttggcgacgcgatcttagactacctcataacgaagcac
ctttacgaagaccctcggcagcattcgcccggcgtgctgacggacctgcgctcggcgcta
gtcaacaacaccatcttcgcctcgctcgctgtcaaatatgactaccacaagttcttcaag
gccatctctccagagctgttccacgtcatcgacgactttgtgcagtttcagctggagaag
gacgagatgcagggcatggactctgagctgcgacgctccgaagaagacgaagagaaggaa
gaggacatcgaggtgcccaaggccatgggggacatctttgagtctctggctggagccatc
tacatggacagcaggatgtccctggagacggtgtggcaggtctactatccaatgatgagg
cctctcatcgagaaattctccgccaacgttcctcgctctccagtccgggaactcctggag
atggaaccagaaactgccaagtttagcccagcggagcgtacctacgacgggaaggtgcgt
gtgacggtggaagttgtcgggaaggggaagttcaaaggagtcggccgcagctaccggatc
gccaagtcggcggcggcccgccgagctctgcgcagcctcaaagccaatcaacctcaggtc
cagaccaactga
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integrated database retrieval system
